DMR 497 chr1:161993001-161993200 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:161993001-161993200 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | OLFML2B (0bp away) |
| ANODEV p-value | 0.0112871017164 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 497 | OLFML2B | 2049 | uc001gbu.3 | chr1 | 161952982 | 161993644 | - | 200 | 100.0 | 0.09 | 0 | 28.0 | E1 (77), I1 (23), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 497 | OLFML2B | 2049 | uc010pkq.2 | chr1 | 161952982 | 161993644 | - | 200 | 100.0 | 0.12 | 0 | 28.0 | E1 (77), I1 (23), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 497 | chr1 | 161993042 | 161994165 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:311, expCount:3, expNums:1,6,40, expScores:286,311,259, srow:283082 |
| 497 | chr1 | 161993065 | 161993078 | tfbsConsSites | V$GATA1_03 | score:864, zScore:2.02, srow:330584 |
| 497 | chr1 | 161993125 | 161993133 | tfbsConsSites | V$ZIC3_01 | score:911, zScore:1.67, srow:330585 |
| 497 | chr1 | 161993047 | 161993047 | cosmic | COSM898643 | srow:81671 |
| 497 | chr1 | 161993062 | 161993062 | cosmic | COSM898644 | srow:81672 |
| 497 | chr1 | 161993094 | 161993094 | cosmic | COSM898645 | srow:81673 |
| 497 | chr1 | 161993153 | 161993153 | cosmic | COSM276443 | srow:81674 |
| 497 | chr1 | 161993166 | 161993166 | cosmic | COSM898646 | srow:81675 |
| 497 | chr1 | 161993171 | 161993172 | cosmic | COSM1689039 | srow:81676 |
| 497 | chr1 | 161993042 | 161993054 | phastConsElements100way | lod=96 | score:445, srow:583763 |
| 497 | chr1 | 161993057 | 161993088 | phastConsElements100way | lod=252 | score:541, srow:583764 |
| 497 | chr1 | 161993091 | 161993094 | phastConsElements100way | lod=18 | score:280, srow:583765 |
| 497 | chr1 | 161993096 | 161993106 | phastConsElements100way | lod=37 | score:351, srow:583766 |
| 497 | chr1 | 161993126 | 161993133 | phastConsElements100way | lod=31 | score:333, srow:583767 |
| 497 | chr1 | 161993144 | 161993148 | phastConsElements100way | lod=14 | score:255, srow:583768 |
| 497 | chr1 | 161993023 | 161994131 | cpgIsland | CpG: 100 | length:1109, cpgNum:100, gcNum:725, perCpg:18, perGc:65.4, obsExp:0.87, srow:1870 |
| 497 | chr1 | 161991023 | 161993022 | cpgShore | — | values(x.gr)[overs$srow, ]:3431 |
- 17 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 497 | cellmeth_recounts | PrEC: 61, LNCaP: 16, DU145: 6 |  |
| 497 | cellmeth_diffreps_PrECvsLNCaP | A=91, B=15, Length=420, Event=Down, log2FC=-2.6, padj=8.04921577895451e-13 |  |
| 497 | cellmeth_diffreps_PrECvsDU145 | A=91, B=11, Length=420, Event=Down, log2FC=-3.05, padj=0 |  |
| 497 | cellexp | id=ENSG00000162745, name=OLFML2B, PrEC=6, str=21, LNCaP=2, str=1, DU145=81, str=28 |  |
| 497 | tcgameth | site:cg07122893, B=0.7, L=0.79, H=0.76 |  |
| 497 | tcgaexp | gene=OLFML2B, entrez=25903, pos=chr1:161952982-161993644(-), B=448, L=362, M=405, H=740 |  |
| 497 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |