DMR 50 chr1:3826651-3826850 (200bp)

DMR Stats
Positionchr1:3826651-3826850 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesLOC100133612 (0bp away)
ANODEV p-value0.00260323285114
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
50 LOC100133612 132 uc001alg.3 chr1 3816968 3832011 + 200 100.0 2.24 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
50 LOC100133612 132 uc001alh.4 chr1 3816968 3833879 + 200 100.0 1.65 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
50 LOC100133612 132 uc010nzo.2 chr1 3816968 3832011 + 200 100.0 2.24 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
50 chr1 3826286 3826935 wgEncodeRegDnaseClusteredV2 16 score:299, srow:3100
50 chr1 3826183 3826698 wgEncodeRegTfbsClusteredV3 POLR2A score:208, expCount:1, expNums:585, expScores:208, srow:11125
50 chr1 3826457 3828456 cpgShelf — values(x.gr)[overs$srow, ]:322
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
50 cellmeth_recounts PrEC: 64, LNCaP: 0, DU145: 0
50 cellmeth_diffreps_PrECvsLNCaP A=97, B=0, Length=480, Event=Down, log2FC=-Inf, padj=0
50 cellmeth_diffreps_PrECvsDU145 A=97, B=0, Length=480, Event=Down, log2FC=-Inf, padj=0
50 cellexp id=ENSG00000236423, name=LINC01134, PrEC=8, str=53, LNCaP=43, str=35, DU145=30, str=13
50 tcgameth site:cg22344254, B=0.75, L=0.8, H=0.75
50 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
50 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305
50 tcgaexp gene=LOC100133612, entrez=100133612, pos=chr1:3816968-3833879(+), B=16, L=33, M=32, H=34