DMR 513 chr1:169680701-169680850 (150bp)

DMR Stats
Positionchr1:169680701-169680850 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesC1orf112, SELL (0bp away)
ANODEV p-value0.00179670491107
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
513 C1orf112 2127 uc001ggj.3 chr1 169631245 169822229 + 150 100.0 1.25 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0) 0.0
513 SELL 2124 uc001ggk.3 chr1 169659806 169680843 - 143 95.33 2.08 0 100.0 E1 (95.33), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
513 SELL 2124 uc001ggl.2 chr1 169670665 169680843 - 143 95.33 1.67 0 100.0 E1 (95.33), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
513 chr1 169680706 169681015 wgEncodeRegDnaseClusteredV2 52 score:1000, srow:80870
513 chr1 169680477 169680978 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:13, expNums:105,306,307,326,328,330,332,334,336,338,340,585,602, expScores:392,1000,149,1000,526,548,874,576,847,872,559,643,249, srow:296179
513 chr1 169680489 169681501 wgEncodeRegTfbsClusteredV3 RELA score:381, expCount:8, expNums:282,300,325,327,329,331,335,337, expScores:228,234,186,128,322,381,239,266, srow:296180
513 chr1 169680565 169680944 wgEncodeRegTfbsClusteredV3 TBP score:223, expCount:1, expNums:317, expScores:223, srow:296181
513 chr1 169680590 169680909 wgEncodeRegTfbsClusteredV3 POU2F2 score:229, expCount:1, expNums:106, expScores:229, srow:296182
513 chr1 169680628 169680863 wgEncodeRegTfbsClusteredV3 BATF score:167, expCount:1, expNums:81, expScores:167, srow:296183
513 chr1 169680647 169681065 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:61, expNums:0,2,5,12,14,16,20,37,48,49,174,213,267,290,493,595,598,601,604,605,606,607,612,615,618,621,627,631,635,642,643,644,647,648,650,651,652,653,654,655,656,658,659,660,662,663,664,665,671,672,673,674,675,676,677,680,681,682,685,686,688, expScores:1000,388,188,115,88,144,145,258,151,102,384,156,154,1000,195,223,243,721,634,685,433,359,308,118,581,210,539,1000,217,129,149,291,149,531,545,349,650,670,269,202,254,110,225,133,348,160,138,169,306,383,751,206,156,145,192,437,80,139,353,123,211, srow:296184
513 chr1 169680653 169680982 wgEncodeRegTfbsClusteredV3 IRF4 score:242, expCount:1, expNums:92, expScores:242, srow:296185
513 chr1 169680659 169681094 wgEncodeRegTfbsClusteredV3 MAZ score:245, expCount:1, expNums:297, expScores:245, srow:296186
513 chr1 169680686 169681346 wgEncodeRegTfbsClusteredV3 ZNF263 score:791, expCount:1, expNums:368, expScores:322, srow:296187
513 chr1 169680706 169680945 wgEncodeRegTfbsClusteredV3 SPI1 score:547, expCount:2, expNums:107,126, expScores:432,547, srow:296188
513 chr1 169680742 169681011 wgEncodeRegTfbsClusteredV3 SMC3 score:509, expCount:1, expNums:313, expScores:509, srow:296189
513 chr1 169680751 169681024 wgEncodeRegTfbsClusteredV3 RAD21 score:785, expCount:8, expNums:108,149,193,264,310,355,405,448, expScores:785,391,322,353,507,252,142,242, srow:296190
513 chr1 169680711 169680724 tfbsConsSites V$CEBPB_02 score:856, zScore:1.85, srow:350000
513 chr1 169680770 169680783 tfbsConsSites V$FOXO1_02 score:803, zScore:1.64, srow:350001
513 chr1 169680773 169680786 tfbsConsSites V$POU3F2_01 score:803, zScore:1.93, srow:350002
513 chr1 169680801 169680804 phastConsElements100way lod=14 score:255, srow:606145
  • 17 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
513 cellmeth_recounts PrEC: 0, LNCaP: 0, DU145: 0
513 cellexp id=ENSG00000000460, name=C1orf112, PrEC=1331, str=435, LNCaP=567, str=1140, DU145=760, str=1062
513 cellexp id=ENSG00000188404, name=SELL, PrEC=4, str=2, LNCaP=124, str=150, DU145=25, str=17
513 tcgaexp gene=SELL, entrez=6402, pos=chr1:169659806-169680843(-), B=373, L=356, M=303, H=470
513 tcgaexp gene=C1orf112, entrez=55732, pos=chr1:169631245-169822229(+), B=232, L=190, M=219, H=278
513 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305