DMR 51613 chr17:77508801-77509050 (250bp)
| DMR Stats | |
|---|---|
| Position | chr17:77508801-77509050 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | RBFOX3 (0bp away) |
| ANODEV p-value | 0.0022762146123 |
| Frequencies | Benign: 5.0 (71.43%), Low: 5.0 (83.33%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51613 | RBFOX3 | 13490 | uc010dhs.4 | chr17 | 77085427 | 77512230 | - | 250 | 100.0 | 3.65 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 51613 | chr17 | 77508696 | 77508978 | cpgIsland | CpG: 25 | length:283, cpgNum:25, gcNum:181, perCpg:17.7, perGc:64, obsExp:0.88, srow:11223 |
| 51613 | chr17 | 77508979 | 77510978 | cpgShore | — | values(x.gr)[overs$srow, ]:20488 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 51613 | cellmeth_recounts | PrEC: 34, LNCaP: 3, DU145: 1 |  |
| 51613 | cellmeth_diffreps_PrECvsLNCaP | A=51, B=2, Length=440, Event=Down, log2FC=-4.67, padj=5.96363880615311e-12 |  |
| 51613 | cellmeth_diffreps_PrECvsDU145 | A=51, B=1, Length=440, Event=Down, log2FC=-5.67, padj=4.78334101268918e-13 |  |
| 51613 | cellexp | id=ENSG00000167281, name=RBFOX3, PrEC=6, str=7, LNCaP=8, str=4, DU145=10, str=4 |  |
| 51613 | tcgaexp | gene=RBFOX3, entrez=146713, pos=chr17:77085427-77512230(-), B=1737, L=997, M=555, H=347 |  |