DMR 517 chr1:171501551-171501750 (200bp)

DMR Stats
Positionchr1:171501551-171501750 (View on UCSC)
Width200bp
Genomic Context3' end
Nearest GenesPRRC2C (0bp away)
ANODEV p-value0.00769003914008
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
517 PRRC2C 2148 uc001ghr.1 chr1 171454666 171502100 + 200 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100) 100.0
517 PRRC2C 2148 uc010pmg.2 chr1 171454666 171562650 + 200 100.0 0.13 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (100), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
517 chr1 171501576 171501589 tfbsConsSites V$FOXO1_02 score:856, zScore:2.58, srow:353900
517 chr1 171501576 171501589 tfbsConsSites V$FOXO3_01 score:870, zScore:2.47, srow:353901
517 chr1 171501576 171501589 tfbsConsSites V$FOXO4_02 score:899, zScore:3.14, srow:353902
517 chr1 171501607 171501622 tfbsConsSites V$ARNT_01 score:870, zScore:2.25, srow:353903
517 chr1 171501586 171501586 cosmic COSM899532 srow:85829
517 chr1 171501586 171501586 cosmic COSM530552 srow:85830
517 chr1 171501586 171501586 cosmic COSM899533 srow:85831
517 chr1 171501586 171501586 cosmic COSM530553 srow:85832
517 chr1 171501621 171501621 cosmic COSM171956 srow:85833
517 chr1 171501648 171501648 cosmic COSM899534 srow:85834
517 chr1 171501648 171501648 cosmic COSM899535 srow:85835
517 chr1 171501678 171501678 cosmic COSM207930 srow:85836
517 chr1 171501720 171501721 cosmic COSM1600371 srow:85837
517 chr1 171501720 171501721 cosmic COSM1600372 srow:85838
517 chr1 171501728 171501728 cosmic COSM1726578 srow:85839
517 chr1 171501728 171501728 cosmic COSM1726577 srow:85840
517 chr1 171501548 171501564 phastConsElements100way lod=165 score:499, srow:612891
517 chr1 171501566 171501597 phastConsElements100way lod=263 score:545, srow:612892
517 chr1 171501599 171501600 phastConsElements100way lod=31 score:333, srow:612893
517 chr1 171501602 171501603 phastConsElements100way lod=30 score:330, srow:612894
517 chr1 171501605 171501606 phastConsElements100way lod=36 score:348, srow:612895
517 chr1 171501608 171501621 phastConsElements100way lod=145 score:486, srow:612896
517 chr1 171501623 171501645 phastConsElements100way lod=221 score:528, srow:612897
517 chr1 171501647 171501672 phastConsElements100way lod=285 score:553, srow:612898
517 chr1 171501674 171501678 phastConsElements100way lod=76 score:422, srow:612899
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Omics Overlaps

Dmrid Omic Set Data Plot
517 cellmeth_recounts PrEC: 10, LNCaP: 3, DU145: 0
517 cellmeth_diffreps_PrECvsDU145 A=15, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000269565104641442
517 cellexp id=ENSG00000117523, name=PRRC2C, PrEC=21695, str=22470, LNCaP=9409, str=15608, DU145=8580, str=10156
517 tcgaexp gene=PRRC2C, entrez=23215, pos=chr1:171454666-171562650(+), B=9833, L=8537, M=9043, H=9731
517 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305