DMR 5201 chr10:95201-95550 (350bp)
| DMR Stats | |
|---|---|
| Position | chr10:95201-95550 (View on UCSC) |
| Width | 350bp |
| Genomic Context | promoter |
| Nearest Genes | TUBB8 (22bp away) |
| ANODEV p-value | 0.00680657780667 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 5201 | chr10 | 95101 | 95315 | wgEncodeRegDnaseClusteredV2 | 3 | score:178, srow:119993 |
| 5201 | chr10 | 94527 | 95301 | cpgIsland | CpG: 64 | length:775, cpgNum:64, gcNum:513, perCpg:16.5, perGc:66.2, obsExp:0.76, srow:2463 |
| 5201 | chr10 | 95302 | 97301 | cpgShore | — | values(x.gr)[overs$srow, ]:4549 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 5201 | cellmeth_recounts | PrEC: 53, LNCaP: 14, DU145: 18 |  |
| 5201 | cellmeth_diffreps_PrECvsLNCaP | A=99, B=24, Length=440, Event=Down, log2FC=-2.04, padj=2.22608713840948e-10 |  |
| 5201 | cellmeth_diffreps_PrECvsDU145 | A=179, B=18, Length=940, Event=Down, log2FC=-3.31, padj=0 |  |
| 5201 | cellexp | id=ENSG00000173876, name=TUBB8, PrEC=0, str=0, LNCaP=6, str=3, DU145=28, str=12 |  |
| 5201 | tcgaexp | gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0 |  |