DMR 52243 chr22:29075551-29075750 (200bp)

DMR Stats
Positionchr22:29075551-29075750 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesTTC28 (0bp away)
ANODEV p-value0.0104959055389
FrequenciesBenign: 5.0 (71.43%), Low: 5.0 (83.33%), High: 2.0 (22.22 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
52243 TTC28 19283 uc003adp.4 chr22 28374002 29075853 - 200 100.0 0.1 0 100.0 E1 (70.5), I1 (29.5), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
52243 chr22 29075381 29076230 wgEncodeRegDnaseClusteredV2 112 score:990, srow:763483
52243 chr22 29075452 29076165 wgEncodeRegTfbsClusteredV3 POLR2A score:708, expCount:15, expNums:61,62,78,131,168,192,206,229,328,402,445,461,525,596,619, expScores:708,352,389,334,479,352,239,488,179,528,230,146,152,187,211, srow:2663274
52243 chr22 29075493 29075859 wgEncodeRegTfbsClusteredV3 PHF8 score:710, expCount:1, expNums:30, expScores:710, srow:2663275
52243 chr22 29075567 29075980 wgEncodeRegTfbsClusteredV3 TAF1 score:593, expCount:4, expNums:115,127,157,199, expScores:131,180,310,593, srow:2663276
52243 chr22 29075623 29075999 wgEncodeRegTfbsClusteredV3 YY1 score:450, expCount:7, expNums:119,128,133,203,244,245,266, expScores:257,263,234,450,239,266,397, srow:2663277
52243 chr22 29075665 29076073 wgEncodeRegTfbsClusteredV3 MAZ score:170, expCount:2, expNums:440,512, expScores:158,170, srow:2663278
52243 chr22 29075666 29076035 wgEncodeRegTfbsClusteredV3 E2F1 score:616, expCount:2, expNums:384,390, expScores:263,616, srow:2663279
52243 chr22 29075707 29076159 wgEncodeRegTfbsClusteredV3 ZBTB7A score:278, expCount:2, expNums:205,247, expScores:278,231, srow:2663280
52243 chr22 29075540 29075568 tfbsConsSites V$MYOGNF1_01 score:736, zScore:1.69, srow:3224548
52243 chr22 29075544 29075562 tfbsConsSites V$AHRARNT_02 score:783, zScore:1.9, srow:3224549
52243 chr22 29075585 29075600 tfbsConsSites V$AHRARNT_01 score:857, zScore:2.2, srow:3224550
52243 chr22 29075679 29075691 tfbsConsSites V$ZID_01 score:847, zScore:1.68, srow:3224551
52243 chr22 29075749 29075766 tfbsConsSites V$AHR_01 score:783, zScore:1.99, srow:3224552
52243 chr22 29075537 29075633 phastConsElements100way lod=308 score:561, srow:5575356
52243 chr22 29075635 29075657 phastConsElements100way lod=54 score:388, srow:5575357
52243 chr22 29075703 29075776 phastConsElements100way lod=140 score:483, srow:5575358
52243 chr22 29075101 29076219 cpgIsland CpG: 114 length:1119, cpgNum:114, gcNum:666, perCpg:20.4, perGc:59.5, obsExp:1.17, srow:17680
  • 17 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
52243 cellmeth_recounts PrEC: 7, LNCaP: 71, DU145: 0
52243 cellmeth_diffreps_PrECvsLNCaP A=27, B=648, Length=1120, Event=Up, log2FC=4.58, padj=0
52243 cellmeth_diffreps_PrECvsDU145 A=23, B=0, Length=380, Event=Down, log2FC=-Inf, padj=1.37590364676336e-06
52243 cellmeth_diffreps_LNCaPvsDU145 A=692.74, B=0.94, Length=1120, Event=Down, log2FC=-9.53, padj=0
52243 cellexp id=ENSG00000100154, name=TTC28, PrEC=769, str=954, LNCaP=477, str=266, DU145=2633, str=1908
52243 tcgaexp gene=TTC28, entrez=23331, pos=chr22:28374002-29075853(-), B=2269, L=1308, M=1347, H=1134