DMR 52468 chrY:13487851-13488050 (200bp)

DMR Stats
PositionchrY:13487851-13488050 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesIGL@ (141586bp away)
ANODEV p-value0.0310225489719
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
52468 chrY 13487926 13489570 wgEncodeRegDnaseClusteredV2 62 score:1000, srow:1281331
52468 chrY 13487992 13488032 phastConsElements100way lod=13 score:247, srow:10102828
52468 chrY 13488005 13489328 cpgIsland CpG: 104 length:1324, cpgNum:104, gcNum:910, perCpg:15.7, perGc:68.7, obsExp:0.67, srow:28643
52468 chrY 13486005 13488004 cpgShore — values(x.gr)[overs$srow, ]:51820
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
52468 cellmeth_recounts PrEC: 81, LNCaP: 0, DU145: 27
52468 cellmeth_diffreps_PrECvsLNCaP A=2523, B=81, Length=2520, Event=Down, log2FC=-4.96, padj=0
52468 cellmeth_diffreps_PrECvsDU145 A=2511, B=505, Length=2280, Event=Down, log2FC=-2.31, padj=0
52468 cellmeth_diffreps_LNCaPvsDU145 A=85.52, B=473.32, Length=2440, Event=Up, log2FC=2.47, padj=0
52468 cellexp id=ENSG00000258991, name=DUX4L19, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0