DMR 55 chr1:4758101-4758300 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:4758101-4758300 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | AJAP1 (0bp away) |
| ANODEV p-value | 0.00016550453712 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55 | AJAP1 | 135 | uc001alm.1 | chr1 | 4715105 | 4837854 | + | 200 | 100.0 | 1.82 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 55 | AJAP1 | 135 | uc001aln.3 | chr1 | 4715105 | 4843851 | + | 200 | 100.0 | 1.7 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 55 | chr1 | 4757866 | 4758115 | wgEncodeRegDnaseClusteredV2 | 2 | score:214, srow:3724 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 55 | cellmeth_recounts | PrEC: 69, LNCaP: 0, DU145: 0 |  |
| 55 | cellmeth_diffreps_PrECvsLNCaP | A=124, B=0, Length=660, Event=Down, log2FC=-Inf, padj=0 |  |
| 55 | cellmeth_diffreps_PrECvsDU145 | A=123, B=4, Length=580, Event=Down, log2FC=-4.94, padj=0 |  |
| 55 | cellexp | id=ENSG00000196581, name=AJAP1, PrEC=198, str=110, LNCaP=1, str=0, DU145=0, str=0 |  |
| 55 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 55 | tcgaexp | gene=AJAP1, entrez=55966, pos=chr1:4715105-4843851(+), B=163, L=62, M=59, H=49 |  |
| 55 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |