DMR 5564 chr10:101156701-101156850 (150bp)
| DMR Stats | |
|---|---|
| Position | chr10:101156701-101156850 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | GOT1 (0bp away) |
| ANODEV p-value | 0.0214846574627 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5564 | GOT1 | 3737 | uc001kpr.3 | chr10 | 101156627 | 101190530 | - | 150 | 100.0 | 0.21 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 5564 | chr10 | 101156661 | 101156935 | wgEncodeRegDnaseClusteredV2 | 5 | score:321, srow:164585 |
| 5564 | chr10 | 101156833 | 101156853 | tfbsConsSites | V$PAX6_01 | score:767, zScore:1.91, srow:672467 |
| 5564 | chr10 | 101156778 | 101156784 | phastConsElements100way | lod=14 | score:255, srow:1180087 |
| 5564 | chr10 | 101156829 | 101156837 | phastConsElements100way | lod=23 | score:304, srow:1180088 |
| 5564 | chr10 | 101156850 | 101156856 | phastConsElements100way | lod=16 | score:268, srow:1180089 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 5564 | cellmeth_recounts | PrEC: 0, LNCaP: 1, DU145: 1 |  |
| 5564 | cellexp | id=ENSG00000120053, name=GOT1, PrEC=4583, str=1807, LNCaP=6814, str=5510, DU145=4655, str=4310 |  |
| 5564 | tcgaexp | gene=GOT1, entrez=2805, pos=chr10:101156627-101190530(-), B=2906, L=2577, M=2472, H=2408 |  |
| 5564 | tcgaexp | gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0 |  |