DMR 56 chr1:4762951-4763150 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:4762951-4763150 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | AJAP1 (0bp away) |
| ANODEV p-value | 0.00227813714962 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56 | AJAP1 | 135 | uc001alm.1 | chr1 | 4715105 | 4837854 | + | 200 | 100.0 | 2.31 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 56 | AJAP1 | 135 | uc001aln.3 | chr1 | 4715105 | 4843851 | + | 200 | 100.0 | 6.05 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 56 | chr1 | 4762966 | 4763335 | wgEncodeRegDnaseClusteredV2 | 31 | score:1000, srow:3729 |
| 56 | chr1 | 4762429 | 4763024 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:247, expCount:1, expNums:368, expScores:247, srow:11555 |
| 56 | chr1 | 4762871 | 4763530 | wgEncodeRegTfbsClusteredV3 | KAP1 | score:436, expCount:1, expNums:588, expScores:436, srow:11556 |
| 56 | chr1 | 4762961 | 4763260 | wgEncodeRegTfbsClusteredV3 | MYC | score:352, expCount:2, expNums:560,561, expScores:352,263, srow:11557 |
| 56 | chr1 | 4762997 | 4763321 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:330, expCount:4, expNums:566,567,568,569, expScores:330,196,206,138, srow:11558 |
| 56 | chr1 | 4763001 | 4763228 | wgEncodeRegTfbsClusteredV3 | FOS | score:890, expCount:4, expNums:556,557,558,559, expScores:887,890,690,811, srow:11559 |
| 56 | chr1 | 4763065 | 4763374 | wgEncodeRegTfbsClusteredV3 | E2F4 | score:301, expCount:1, expNums:562, expScores:301, srow:11560 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 56 | cellmeth_recounts | PrEC: 19, LNCaP: 4, DU145: 1 |  |
| 56 | cellmeth_diffreps_PrECvsLNCaP | A=30, B=3, Length=360, Event=Down, log2FC=-3.32, padj=2.19579714294232e-05 |  |
| 56 | cellmeth_diffreps_PrECvsDU145 | A=30, B=1, Length=400, Event=Down, log2FC=-4.91, padj=4.59319638008846e-07 |  |
| 56 | cellexp | id=ENSG00000196581, name=AJAP1, PrEC=198, str=110, LNCaP=1, str=0, DU145=0, str=0 |  |
| 56 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 56 | tcgaexp | gene=AJAP1, entrez=55966, pos=chr1:4715105-4843851(+), B=163, L=62, M=59, H=49 |  |
| 56 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |