DMR 5657 chr10:124458551-124458850 (300bp)
| DMR Stats | |
|---|---|
| Position | chr10:124458551-124458850 (View on UCSC) |
| Width | 300bp |
| Genomic Context | promoter |
| Nearest Genes | C10orf120 (0bp away) |
| ANODEV p-value | 0.00151474652631 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 1.0 (11.11 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5657 | C10orf120 | 3961 | uc001lgn.3 | chr10 | 124457225 | 124459338 | - | 300 | 100.0 | 6.4 | 0 | 4.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 5657 | chr10 | 124458681 | 124458910 | wgEncodeRegDnaseClusteredV2 | 8 | score:209, srow:176439 |
| 5657 | chr10 | 124458654 | 124458923 | wgEncodeRegTfbsClusteredV3 | CTCF | score:309, expCount:11, expNums:5,137,595,598,609,621,627,628,629,630,631, expScores:198,309,171,155,112,181,232,166,200,177,307, srow:623967 |
| 5657 | chr10 | 124458661 | 124458904 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:699, expCount:2, expNums:149,355, expScores:699,319, srow:623968 |
| 5657 | chr10 | 124458847 | 124458852 | phastConsElements100way | lod=32 | score:337, srow:1278783 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 5657 | cellmeth_recounts | PrEC: 0, LNCaP: 1, DU145: 14 |  |
| 5657 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=220, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 5657 | cellexp | id=ENSG00000183559, name=C10orf120, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 5657 | tcgaexp | gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0 |  |
| 5657 | tcgaexp | gene=FAM45B, entrez=55855, pos=chr10:120863611-129631421(+), B=500, L=423, M=440, H=462 |  |
| 5657 | tcgaexp | gene=C10orf120, entrez=399814, pos=chr10:124457225-124459338(-), B=0, L=0, M=0, H=0 |  |