DMR 58 chr1:4794001-4794150 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:4794001-4794150 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | AJAP1 (0bp away) |
| ANODEV p-value | 0.00728582822816 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58 | AJAP1 | 135 | uc001alm.1 | chr1 | 4715105 | 4837854 | + | 150 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 58 | AJAP1 | 135 | uc001aln.3 | chr1 | 4715105 | 4843851 | + | 150 | 100.0 | 0.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 58 | chr1 | 4793845 | 4794254 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:230, expCount:1, expNums:25, expScores:230, srow:11572 |
| 58 | chr1 | 4793932 | 4794001 | phastConsElements100way | lod=227 | score:530, srow:18147 |
| 58 | chr1 | 4794063 | 4794067 | phastConsElements100way | lod=13 | score:247, srow:18148 |
| 58 | chr1 | 4794076 | 4794086 | phastConsElements100way | lod=20 | score:290, srow:18149 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 58 | cellmeth_recounts | PrEC: 31, LNCaP: 5, DU145: 3 |  |
| 58 | cellmeth_diffreps_PrECvsLNCaP | A=48, B=5, Length=440, Event=Down, log2FC=-3.26, padj=1.64531960441557e-08 |  |
| 58 | cellmeth_diffreps_PrECvsDU145 | A=48, B=2, Length=440, Event=Down, log2FC=-4.58, padj=5.63454108111319e-11 |  |
| 58 | cellexp | id=ENSG00000196581, name=AJAP1, PrEC=198, str=110, LNCaP=1, str=0, DU145=0, str=0 |  |
| 58 | tcgameth | site:cg27181471, B=0.64, L=0.73, H=0.67 |  |
| 58 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 58 | tcgaexp | gene=AJAP1, entrez=55966, pos=chr1:4715105-4843851(+), B=163, L=62, M=59, H=49 |  |
| 58 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |