DMR 62 chr1:5560651-5561050 (400bp)

DMR Stats
Positionchr1:5560651-5561050 (View on UCSC)
Width400bp
Genomic Contextintergenic
Nearest GenesAK125078 (60718bp away)
ANODEV p-value0.00442091826143
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
62 chr1 5560926 5561275 wgEncodeRegDnaseClusteredV2 5 score:323, srow:4082
62 chr1 5560637 5560940 wgEncodeRegTfbsClusteredV3 TCF3 score:283, expCount:1, expNums:117, expScores:283, srow:11850
62 chr1 5560667 5560933 wgEncodeRegTfbsClusteredV3 BCL3 score:484, expCount:1, expNums:83, expScores:484, srow:11851
62 chr1 5560690 5560909 wgEncodeRegTfbsClusteredV3 PBX3 score:223, expCount:1, expNums:102, expScores:223, srow:11852
62 chr1 5560711 5560914 wgEncodeRegTfbsClusteredV3 NFATC1 score:491, expCount:1, expNums:96, expScores:491, srow:11853
  • 5 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
62 cellmeth_recounts PrEC: 105, LNCaP: 47, DU145: 28
62 cellmeth_diffreps_PrECvsLNCaP A=157, B=37, Length=500, Event=Down, log2FC=-2.09, padj=0
62 cellmeth_diffreps_PrECvsDU145 A=157, B=21, Length=440, Event=Down, log2FC=-2.9, padj=0
62 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
62 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305