DMR 69 chr1:6257051-6257200 (150bp)

DMR Stats
Positionchr1:6257051-6257200 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesRPL22 (0bp away)
ANODEV p-value0.00832382267882
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
69 RPL22 143 uc001amd.3 chr1 6245080 6259679 - 150 100.0 0.3 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
69 RPL22 143 uc001ame.3 chr1 6245080 6259679 - 150 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
69 chr1 6257179 6259178 cpgShore — values(x.gr)[overs$srow, ]:529
69 chr1 6255179 6257178 cpgShelf — values(x.gr)[overs$srow, ]:358
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
69 cellmeth_recounts PrEC: 49, LNCaP: 15, DU145: 17
69 cellmeth_diffreps_PrECvsLNCaP A=76, B=13, Length=400, Event=Down, log2FC=-2.55, padj=1.95069652193348e-10
69 cellmeth_diffreps_PrECvsDU145 A=76, B=15, Length=400, Event=Down, log2FC=-2.34, padj=2.65166758147492e-09
69 cellexp id=ENSG00000116251, name=RPL22, PrEC=7011, str=3775, LNCaP=9345, str=7785, DU145=3808, str=5248
69 tcgaexp gene=RPL22, entrez=6146, pos=chr1:6245080-6259679(-), B=19870, L=23333, M=24067, H=22289
69 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
69 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305