DMR 71 chr1:6268801-6269000 (200bp)

DMR Stats
Positionchr1:6268801-6269000 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesRNF207 (0bp away)
ANODEV p-value0.013803254182
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
71 RNF207 144 uc001amg.3 chr1 6266189 6281359 + 200 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (70), E4 (30), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) 0.0
71 RNF207 144 uc001amh.3 chr1 6268678 6270960 + 200 100.0 0.3 0 100.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
71 RNF207 144 uc010nzp.1 chr1 6268941 6278429 + 60 30.0 0.18 1 100.0 E1 (30), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
71 chr1 6268646 6269255 wgEncodeRegDnaseClusteredV2 74 score:1000, srow:4803
71 chr1 6268631 6269054 wgEncodeRegTfbsClusteredV3 POLR2A score:241, expCount:1, expNums:522, expScores:241, srow:13174
71 chr1 6268634 6269129 wgEncodeRegTfbsClusteredV3 HMGN3 score:181, expCount:1, expNums:501, expScores:181, srow:13175
71 chr1 6268658 6269113 wgEncodeRegTfbsClusteredV3 CCNT2 score:162, expCount:1, expNums:476, expScores:162, srow:13176
71 chr1 6268673 6268982 wgEncodeRegTfbsClusteredV3 GABPA score:120, expCount:1, expNums:220, expScores:120, srow:13177
71 chr1 6268673 6269102 wgEncodeRegTfbsClusteredV3 MYC score:759, expCount:6, expNums:486,487,488,489,490,620, expScores:184,759,324,754,221,351, srow:13178
71 chr1 6268680 6269084 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:70, expNums:2,5,14,16,18,20,24,35,37,39,42,44,137,213,262,290,463,493,597,601,603,604,605,606,607,609,618,621,635,636,639,640,641,642,643,644,645,646,650,651,652,653,654,655,656,657,658,659,660,661,662,664,668,669,670,671,672,673,674,675,676,677,678,679,682,683,684,687,688,689, expScores:362,412,95,337,118,442,527,209,444,302,420,170,250,633,309,447,601,703,851,418,497,514,673,312,429,406,176,702,406,632,676,547,149,488,456,357,469,287,656,189,391,1000,476,575,487,636,454,325,185,700,498,194,236,303,130,517,220,377,527,209,425,904,426,652,619,611,210,1000,701,187, srow:13179
71 chr1 6268696 6269071 wgEncodeRegTfbsClusteredV3 TBP score:213, expCount:1, expNums:545, expScores:213, srow:13180
71 chr1 6268702 6269051 wgEncodeRegTfbsClusteredV3 HDAC2 score:181, expCount:3, expNums:27,141,222, expScores:181,152,132, srow:13181
71 chr1 6268702 6268980 wgEncodeRegTfbsClusteredV3 NRF1 score:177, expCount:2, expNums:303,518, expScores:177,123, srow:13182
71 chr1 6268709 6269143 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:3, expNums:223,460,511, expScores:1000,321,590, srow:13183
71 chr1 6268713 6269082 wgEncodeRegTfbsClusteredV3 REST score:181, expCount:1, expNums:252, expScores:181, srow:13184
71 chr1 6268736 6269171 wgEncodeRegTfbsClusteredV3 MXI1 score:204, expCount:2, expNums:298,513, expScores:204,135, srow:13185
71 chr1 6268738 6269137 wgEncodeRegTfbsClusteredV3 TAF1 score:201, expCount:1, expNums:238, expScores:201, srow:13186
71 chr1 6268738 6269177 wgEncodeRegTfbsClusteredV3 CBX3 score:255, expCount:1, expNums:211, expScores:255, srow:13187
71 chr1 6268739 6269145 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:2, expNums:215,495, expScores:1000,1000, srow:13188
71 chr1 6268741 6269076 wgEncodeRegTfbsClusteredV3 E2F4 score:120, expCount:1, expNums:494, expScores:120, srow:13189
71 chr1 6268768 6269057 wgEncodeRegTfbsClusteredV3 ZNF143 score:229, expCount:1, expNums:552, expScores:229, srow:13190
71 chr1 6268768 6269091 wgEncodeRegTfbsClusteredV3 BACH1 score:365, expCount:1, expNums:341, expScores:365, srow:13191
71 chr1 6268780 6269032 wgEncodeRegTfbsClusteredV3 RAD21 score:237, expCount:3, expNums:231,264,466, expScores:194,167,237, srow:13192
71 chr1 6268789 6269092 wgEncodeRegTfbsClusteredV3 FOXP2 score:268, expCount:1, expNums:251, expScores:268, srow:13193
71 chr1 6268792 6269121 wgEncodeRegTfbsClusteredV3 BHLHE40 score:704, expCount:2, expNums:284,472, expScores:395,704, srow:13194
71 chr1 6268793 6269052 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:193, expCount:1, expNums:232, expScores:193, srow:13195
71 chr1 6268800 6269031 wgEncodeRegTfbsClusteredV3 RUNX3 score:828, expCount:1, expNums:109, expScores:828, srow:13196
71 chr1 6268834 6269138 wgEncodeRegTfbsClusteredV3 USF1 score:281, expCount:2, expNums:118,265, expScores:281,271, srow:13197
  • Page 1 of 2
  • 25 of 40 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
71 cellmeth_recounts PrEC: 392, LNCaP: 277, DU145: 9
71 cellmeth_diffreps_PrECvsLNCaP A=1292, B=576, Length=1080, Event=Down, log2FC=-1.17, padj=0
71 cellmeth_diffreps_PrECvsDU145 A=1336, B=51, Length=1360, Event=Down, log2FC=-4.71, padj=0
71 cellmeth_diffreps_LNCaPvsDU145 A=635.01, B=37.42, Length=1180, Event=Down, log2FC=-4.09, padj=0
71 cellexp id=ENSG00000116251, name=RPL22, PrEC=7011, str=3775, LNCaP=9345, str=7785, DU145=3808, str=5248
71 cellexp id=ENSG00000158286, name=RNF207, PrEC=772, str=1489, LNCaP=542, str=266, DU145=993, str=933
71 tcgameth site:cg18235937, B=0.56, L=0.6, H=0.58
71 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
71 tcgaexp gene=RNF207, entrez=388591, pos=chr1:6266189-6281359(+), B=476, L=319, M=304, H=325
71 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305