DMR 72 chr1:6291851-6292000 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:6291851-6292000 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | ICMT (0bp away) |
| ANODEV p-value | 0.0490079339131 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 4.0 (44.44 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72 | ICMT | 145 | uc001amk.3 | chr1 | 6281253 | 6296044 | - | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (26), I4 (74), E5 (0) | 0.0 |
| 72 | ICMT | 145 | uc001aml.3 | chr1 | 6281253 | 6296044 | - | 150 | 100.0 | 0.24 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (26), I5 (74), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 72 | chr1 | 6291920 | 6292269 | wgEncodeRegTfbsClusteredV3 | YY1 | score:532, expCount:2, expNums:245,266, expScores:149,532, srow:13252 |
| 72 | chr1 | 6291963 | 6292202 | wgEncodeRegTfbsClusteredV3 | USF1 | score:592, expCount:1, expNums:265, expScores:592, srow:13253 |
| 72 | chr1 | 6291959 | 6291967 | phastConsElements100way | lod=125 | score:471, srow:21748 |
| 72 | chr1 | 6291969 | 6291970 | phastConsElements100way | lod=28 | score:323, srow:21749 |
| 72 | chr1 | 6291972 | 6291988 | phastConsElements100way | lod=232 | score:533, srow:21750 |
| 72 | chr1 | 6291990 | 6291991 | phastConsElements100way | lod=28 | score:323, srow:21751 |
| 72 | chr1 | 6291993 | 6291994 | phastConsElements100way | lod=30 | score:330, srow:21752 |
| 72 | chr1 | 6291996 | 6291997 | phastConsElements100way | lod=33 | score:340, srow:21753 |
| 72 | chr1 | 6291999 | 6292000 | phastConsElements100way | lod=38 | score:354, srow:21754 |
| 72 | chr1 | 6291529 | 6293528 | cpgShelf | — | values(x.gr)[overs$srow, ]:361 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 72 | cellmeth_recounts | PrEC: 4, LNCaP: 8, DU145: 3 |  |
| 72 | cellexp | id=ENSG00000116237, name=ICMT, PrEC=11330, str=9864, LNCaP=6604, str=9553, DU145=12241, str=18526 |  |
| 72 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 72 | tcgaexp | gene=ICMT, entrez=23463, pos=chr1:6281253-6296044(-), B=5872, L=6441, M=5947, H=5900 |  |
| 72 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |