DMR 74 chr1:6396001-6396250 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:6396001-6396250 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | ACOT7 (0bp away) |
| ANODEV p-value | 0.0390175654532 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74 | ACOT7 | 149 | uc001amq.3 | chr1 | 6324332 | 6419004 | - | 250 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 74 | ACOT7 | 149 | uc001amr.3 | chr1 | 6324332 | 6420764 | - | 250 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 74 | ACOT7 | 149 | uc001ams.3 | chr1 | 6324332 | 6445883 | - | 250 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 74 | ACOT7 | 149 | uc001amt.3 | chr1 | 6324332 | 6453826 | - | 250 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 74 | ACOT7 | 149 | uc001amu.3 | chr1 | 6324332 | 6453826 | - | 250 | 100.0 | 0.24 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 74 | chr1 | 6395986 | 6396215 | wgEncodeRegDnaseClusteredV2 | 4 | score:455, srow:4949 |
| 74 | chr1 | 6395985 | 6396002 | tfbsConsSites | V$RFX1_02 | score:871, zScore:2.64, srow:10123 |
| 74 | chr1 | 6396004 | 6396011 | phastConsElements100way | lod=15 | score:262, srow:22280 |
| 74 | chr1 | 6396016 | 6396028 | phastConsElements100way | lod=23 | score:304, srow:22281 |
| 74 | chr1 | 6396035 | 6396052 | phastConsElements100way | lod=34 | score:343, srow:22282 |
| 74 | chr1 | 6396056 | 6396061 | phastConsElements100way | lod=17 | score:274, srow:22283 |
| 74 | chr1 | 6396072 | 6396098 | phastConsElements100way | lod=21 | score:295, srow:22284 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 74 | cellmeth_recounts | PrEC: 32, LNCaP: 37, DU145: 15 |  |
| 74 | cellmeth_diffreps_PrECvsLNCaP | A=12, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00157949948552458 |  |
| 74 | cellmeth_diffreps_PrECvsDU145 | A=51, B=12, Length=360, Event=Down, log2FC=-2.09, padj=2.37743486452325e-05 |  |
| 74 | cellmeth_diffreps_LNCaPvsDU145 | A=35.28, B=11.22, Length=360, Event=Down, log2FC=-1.65, padj=0.0259441878374661 |  |
| 74 | cellexp | id=ENSG00000097021, name=ACOT7, PrEC=12700, str=8241, LNCaP=2240, str=2875, DU145=2964, str=3293 |  |
| 74 | tcgameth | site:cg22171613, B=0.9, L=0.91, H=0.9 |  |
| 74 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 74 | tcgaexp | gene=ACOT7, entrez=11332, pos=chr1:6324332-6453826(-), B=931, L=1051, M=923, H=1026 |  |
| 74 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |