DMR 7740 chr16:29393451-29393750 (300bp)
| DMR Stats | |
|---|---|
| Position | chr16:29393451-29393750 (View on UCSC) |
| Width | 300bp |
| Genomic Context | promoter |
| Nearest Genes | SNX29P2, NPIPL1 (0bp away) |
| ANODEV p-value | 0.00103016695686 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7740 | SNX29P2 | 11200 | uc010bys.1 | chr16 | 29339874 | 29418349 | + | 300 | 100.0 | 0.07 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0) | 0.0 |
| 7740 | NPIPL1 | 11176 | uc010vct.2 | chr16 | 28467696 | 29415809 | - | 300 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 7740 | chr16 | 29393461 | 29393630 | wgEncodeRegDnaseClusteredV2 | 6 | score:785, srow:443404 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 7740 | cellmeth_recounts | PrEC: 2, LNCaP: 0, DU145: 1 |  |
| 7740 | cellexp | id=ENSG00000198106, name=SNX29P2, PrEC=4, str=12, LNCaP=22, str=7, DU145=8, str=9 |  |
| 7740 | cellexp | id=ENSG00000254206, name=NPIPB11, PrEC=37, str=94, LNCaP=44, str=33, DU145=53, str=28 |  |
| 7740 | tcgaexp | gene=SNX29P2, entrez=440352, pos=chr16:29302828-29418349(+), B=44, L=28, M=30, H=44 |  |