DMR 78 chr1:6713951-6714200 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:6713951-6714200 (View on UCSC) |
| Width | 250bp |
| Genomic Context | exon |
| Nearest Genes | DNAJC11 (0bp away) |
| ANODEV p-value | 0.0175381179788 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78 | DNAJC11 | 161 | uc001aof.2 | chr1 | 6694228 | 6761966 | - | 250 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (40.8), E5 (51.6), I5 (8), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 78 | DNAJC11 | 161 | uc001aog.2 | chr1 | 6694228 | 6761966 | - | 250 | 100.0 | 0.65 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (40.8), E5 (51.6), I5 (8), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 78 | DNAJC11 | 161 | uc010nzu.1 | chr1 | 6694228 | 6761966 | - | 250 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (40.8), E4 (51.6), I4 (8), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 78 | chr1 | 6713761 | 6713970 | wgEncodeRegDnaseClusteredV2 | 4 | score:485, srow:5270 |
| 78 | chr1 | 6714101 | 6714250 | wgEncodeRegDnaseClusteredV2 | 4 | score:803, srow:5271 |
| 78 | chr1 | 6714007 | 6714024 | tfbsConsSites | V$CEBP_C | score:813, zScore:1.85, srow:11338 |
| 78 | chr1 | 6714027 | 6714049 | tfbsConsSites | V$OCT1_04 | score:791, zScore:1.64, srow:11339 |
| 78 | chr1 | 6714061 | 6714083 | tfbsConsSites | V$PPARG_02 | score:710, zScore:2.19, srow:11340 |
| 78 | chr1 | 6714080 | 6714091 | tfbsConsSites | V$EGR3_01 | score:823, zScore:1.72, srow:11341 |
| 78 | chr1 | 6714098 | 6714106 | tfbsConsSites | V$AP2GAMMA_01 | score:973, zScore:1.69, srow:11342 |
| 78 | chr1 | 6714011 | 6714011 | cosmic | COSM911733 | srow:3759 |
| 78 | chr1 | 6714011 | 6714011 | cosmic | COSM911732 | srow:3760 |
| 78 | chr1 | 6714027 | 6714027 | cosmic | COSM1725794 | srow:3761 |
| 78 | chr1 | 6714027 | 6714027 | cosmic | COSM1627162 | srow:3762 |
| 78 | chr1 | 6714027 | 6714027 | cosmic | COSM1725793 | srow:3763 |
| 78 | chr1 | 6714027 | 6714027 | cosmic | COSM1627161 | srow:3764 |
| 78 | chr1 | 6714039 | 6714039 | cosmic | COSM160530 | srow:3765 |
| 78 | chr1 | 6713964 | 6713973 | phastConsElements100way | lod=79 | score:426, srow:24553 |
| 78 | chr1 | 6713975 | 6714012 | phastConsElements100way | lod=471 | score:603, srow:24554 |
| 78 | chr1 | 6714014 | 6714021 | phastConsElements100way | lod=90 | score:439, srow:24555 |
| 78 | chr1 | 6714023 | 6714027 | phastConsElements100way | lod=36 | score:348, srow:24556 |
| 78 | chr1 | 6714029 | 6714030 | phastConsElements100way | lod=33 | score:340, srow:24557 |
| 78 | chr1 | 6714032 | 6714039 | phastConsElements100way | lod=70 | score:414, srow:24558 |
| 78 | chr1 | 6714041 | 6714042 | phastConsElements100way | lod=26 | score:316, srow:24559 |
| 78 | chr1 | 6714044 | 6714048 | phastConsElements100way | lod=50 | score:381, srow:24560 |
| 78 | chr1 | 6714050 | 6714087 | phastConsElements100way | lod=402 | score:587, srow:24561 |
| 78 | chr1 | 6714089 | 6714109 | phastConsElements100way | lod=180 | score:508, srow:24562 |
| 78 | chr1 | 6714120 | 6714126 | phastConsElements100way | lod=25 | score:312, srow:24563 |
- 25 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 78 | cellmeth_recounts | PrEC: 33, LNCaP: 19, DU145: 12 |  |
| 78 | cellmeth_diffreps_PrECvsLNCaP | A=49, B=15, Length=360, Event=Down, log2FC=-1.71, padj=0.00052503782138665 |  |
| 78 | cellmeth_diffreps_PrECvsDU145 | A=49, B=9, Length=380, Event=Down, log2FC=-2.44, padj=2.90667851454148e-06 |  |
| 78 | cellexp | id=ENSG00000007923, name=DNAJC11, PrEC=4443, str=2312, LNCaP=2841, str=3974, DU145=2524, str=3249 |  |
| 78 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 78 | tcgaexp | gene=DNAJC11, entrez=55735, pos=chr1:6694228-6761966(-), B=2388, L=2782, M=2580, H=2579 |  |
| 78 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |