DMR 8080 chr17:56651-56800 (150bp)

DMR Stats
Positionchr17:56651-56800 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesRPH3AL (5379bp away)
ANODEV p-value0.0302967545224
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
8080 chr17 56204 56712 wgEncodeRegTfbsClusteredV3 SP1 score:197, expCount:2, expNums:112,153, expScores:145,197, srow:1606203
8080 chr17 56538 56768 phastConsElements100way lod=105 score:454, srow:3518044
8080 chr17 56790 56956 phastConsElements100way lod=68 score:411, srow:3518045
8080 chr17 56120 57232 cpgIsland CpG: 78 length:1113, cpgNum:78, gcNum:617, perCpg:14, perGc:55.4, obsExp:0.98, srow:9872
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
8080 cellmeth_recounts PrEC: 120, LNCaP: 5, DU145: 36
8080 cellmeth_diffreps_PrECvsLNCaP A=838, B=30, Length=1500, Event=Down, log2FC=-4.8, padj=0
8080 cellmeth_diffreps_PrECvsDU145 A=838, B=57, Length=1480, Event=Down, log2FC=-3.88, padj=0
8080 cellmeth_diffreps_LNCaPvsDU145 A=4.28, B=23.39, Length=240, Event=Up, log2FC=2.45, padj=0.0119805802836214