DMR Stats
Positionchr17:82001-82200 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesRPH3AL (0bp away)
ANODEV p-value4.73734342907e-05
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
8081 RPH3AL 11877 uc002fre.2 chr17 62180 202633 - 200 100.0 0.42 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
8081 RPH3AL 11877 uc002frf.2 chr17 62180 202633 - 200 100.0 0.74 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
8081 RPH3AL 11877 uc010cjl.2 chr17 62180 202633 - 200 100.0 0.74 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
8081 RPH3AL 11877 uc010vpy.2 chr17 62180 177370 - 200 100.0 0.32 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) 0.0
8081 RPH3AL 11877 uc021tmx.1 chr17 62180 202633 - 200 100.0 0.32 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
8081 chr17 81748 82067 wgEncodeRegTfbsClusteredV3 E2F4 score:274, expCount:1, expNums:291, expScores:274, srow:1606228
8081 chr17 81765 82080 wgEncodeRegTfbsClusteredV3 EBF1 score:420, expCount:2, expNums:86,292, expScores:324,420, srow:1606229
8081 chr17 81010 83009 cpgShelf values(x.gr)[overs$srow, ]:15379
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
8081 cellmeth_recounts PrEC: 35, LNCaP: 6, DU145: 14
8081 cellmeth_diffreps_PrECvsLNCaP A=62, B=5, Length=440, Event=Down, log2FC=-3.63, padj=3.89232257711764e-12
8081 cellmeth_diffreps_PrECvsDU145 A=59, B=12, Length=400, Event=Down, log2FC=-2.3, padj=5.15522839206326e-07
8081 cellexp id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616
8081 tcgaexp gene=RPH3AL, entrez=9501, pos=chr17:62180-202633(-), B=579, L=622, M=682, H=475