DMR 8083 chr17:105551-105900 (350bp)

DMR Stats
Positionchr17:105551-105900 (View on UCSC)
Width350bp
Genomic Contextintron
Nearest GenesRPH3AL (0bp away)
ANODEV p-value0.00142649427923
FrequenciesBenign: 4.0 (57.14%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
8083 RPH3AL 11877 uc002fre.2 chr17 62180 202633 - 350 100.0 0.32 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
8083 RPH3AL 11877 uc002frf.2 chr17 62180 202633 - 350 100.0 0.32 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
8083 RPH3AL 11877 uc010cjl.2 chr17 62180 202633 - 350 100.0 0.32 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
8083 RPH3AL 11877 uc010vpy.2 chr17 62180 177370 - 350 100.0 0.43 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
8083 RPH3AL 11877 uc021tmx.1 chr17 62180 202633 - 350 100.0 0.43 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields

Omics Overlaps

Dmrid Omic Set Data Plot
8083 cellmeth_recounts PrEC: 37, LNCaP: 11, DU145: 15
8083 cellmeth_diffreps_PrECvsLNCaP A=157, B=14, Length=800, Event=Down, log2FC=-3.49, padj=0
8083 cellmeth_diffreps_PrECvsDU145 A=157, B=41, Length=720, Event=Down, log2FC=-1.94, padj=0
8083 cellmeth_diffreps_LNCaPvsDU145 A=5.35, B=31.8, Length=300, Event=Up, log2FC=2.57, padj=0.000802664937158908
8083 cellexp id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616
8083 tcgameth site:cg06324707, B=0.94, L=0.94, H=0.93
8083 tcgaexp gene=RPH3AL, entrez=9501, pos=chr17:62180-202633(-), B=579, L=622, M=682, H=475
8083 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486