DMR 8084 chr17:132251-132550 (300bp)
| DMR Stats | |
|---|---|
| Position | chr17:132251-132550 (View on UCSC) |
| Width | 300bp |
| Genomic Context | intron |
| Nearest Genes | RPH3AL (0bp away) |
| ANODEV p-value | 0.000391703372317 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 1.0 (11.11 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8084 | RPH3AL | 11877 | uc002fre.2 | chr17 | 62180 | 202633 | - | 300 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 8084 | RPH3AL | 11877 | uc002frf.2 | chr17 | 62180 | 202633 | - | 300 | 100.0 | 0.69 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 8084 | RPH3AL | 11877 | uc010cjl.2 | chr17 | 62180 | 202633 | - | 300 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 8084 | RPH3AL | 11877 | uc010vpy.2 | chr17 | 62180 | 177370 | - | 300 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 8084 | RPH3AL | 11877 | uc021tmx.1 | chr17 | 62180 | 202633 | - | 300 | 100.0 | 0.7 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 8084 | chr17 | 132406 | 132835 | wgEncodeRegDnaseClusteredV2 | 14 | score:617, srow:471037 |
| 8084 | chr17 | 132333 | 132656 | wgEncodeRegTfbsClusteredV3 | EP300 | score:210, expCount:1, expNums:190, expScores:210, srow:1606261 |
| 8084 | chr17 | 132334 | 132673 | wgEncodeRegTfbsClusteredV3 | HDAC2 | score:147, expCount:1, expNums:181, expScores:147, srow:1606262 |
| 8084 | chr17 | 132340 | 132615 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:1000, expCount:7, expNums:172,277,378,425,426,462,477, expScores:780,547,187,1000,1000,582,195, srow:1606263 |
| 8084 | chr17 | 132340 | 132609 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:148, expCount:1, expNums:450, expScores:148, srow:1606264 |
| 8084 | chr17 | 132346 | 132635 | wgEncodeRegTfbsClusteredV3 | JUN | score:394, expCount:1, expNums:428, expScores:394, srow:1606265 |
| 8084 | chr17 | 132349 | 132644 | wgEncodeRegTfbsClusteredV3 | HNF4A | score:230, expCount:2, expNums:182,432, expScores:203,230, srow:1606266 |
| 8084 | chr17 | 132364 | 132637 | wgEncodeRegTfbsClusteredV3 | FOXA1 | score:1000, expCount:4, expNums:53,177,178,271, expScores:254,872,1000,358, srow:1606267 |
| 8084 | chr17 | 132364 | 132619 | wgEncodeRegTfbsClusteredV3 | JUND | score:1000, expCount:2, expNums:184,435, expScores:378,1000, srow:1606268 |
| 8084 | chr17 | 132367 | 132642 | wgEncodeRegTfbsClusteredV3 | CEBPD | score:357, expCount:1, expNums:173, expScores:357, srow:1606269 |
| 8084 | chr17 | 132370 | 132679 | wgEncodeRegTfbsClusteredV3 | NR3C1 | score:351, expCount:2, expNums:56,58, expScores:351,306, srow:1606270 |
| 8084 | chr17 | 132388 | 132590 | wgEncodeRegTfbsClusteredV3 | FOXA2 | score:916, expCount:1, expNums:179, expScores:916, srow:1606271 |
- 12 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 8084 | cellmeth_recounts | PrEC: 11, LNCaP: 0, DU145: 8 |  |
| 8084 | cellmeth_diffreps_PrECvsLNCaP | A=250, B=21, Length=800, Event=Down, log2FC=-3.57, padj=0 |  |
| 8084 | cellmeth_diffreps_PrECvsDU145 | A=250, B=24, Length=760, Event=Down, log2FC=-3.38, padj=0 |  |
| 8084 | cellexp | id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616 |  |
| 8084 | tcgaexp | gene=RPH3AL, entrez=9501, pos=chr17:62180-202633(-), B=579, L=622, M=682, H=475 |  |
| 8084 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 8084 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |