DMR 8147 chr17:8054451-8054650 (200bp)
| DMR Stats | |
|---|---|
| Position | chr17:8054451-8054650 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | PER1 (0bp away) |
| ANODEV p-value | 0.0129036427384 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8147 | PER1 | 12149 | uc002gkd.3 | chr17 | 8043788 | 8055753 | - | 200 | 100.0 | 1.32 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
| 8147 | PER1 | 12149 | uc010vur.1 | chr17 | 8047374 | 8059678 | - | 200 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 8147 | chr17 | 8054446 | 8054790 | wgEncodeRegDnaseClusteredV2 | 112 | score:1000, srow:477292 |
| 8147 | chr17 | 8054206 | 8054721 | wgEncodeRegTfbsClusteredV3 | TFAP2C | score:249, expCount:1, expNums:370, expScores:249, srow:1630020 |
| 8147 | chr17 | 8054209 | 8060681 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:65, expNums:22,41,61,62,78,104,105,123,124,130,131,146,147,163,168,191,192,206,207,228,229,256,259,275,279,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,445,446,461,465,520,521,522,523,525,563,564,577,583,585,596,599,602,610,613,619,622,632,633,637, expScores:270,217,1000,1000,427,1000,774,559,459,650,1000,506,764,231,514,255,920,371,470,293,361,154,465,296,311,227,564,376,427,440,253,270,418,422,208,244,230,109,366,1000,303,156,199,322,480,220,324,293,214,219,256,174,275,382,280,192,119,148,140,192,105,221,415,619,136, srow:1630021 |
| 8147 | chr17 | 8054297 | 8054676 | wgEncodeRegTfbsClusteredV3 | TBP | score:134, expCount:1, expNums:317, expScores:134, srow:1630022 |
| 8147 | chr17 | 8054334 | 8054869 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:436, expCount:2, expNums:312,357, expScores:304,436, srow:1630023 |
| 8147 | chr17 | 8054380 | 8054835 | wgEncodeRegTfbsClusteredV3 | CCNT2 | score:310, expCount:1, expNums:476, expScores:310, srow:1630024 |
| 8147 | chr17 | 8054391 | 8054830 | wgEncodeRegTfbsClusteredV3 | MYC | score:320, expCount:6, expNums:487,488,489,560,575,624, expScores:320,151,303,198,239,243, srow:1630025 |
| 8147 | chr17 | 8054392 | 8054827 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:962, expCount:3, expNums:298,353,513, expScores:962,198,302, srow:1630026 |
| 8147 | chr17 | 8054402 | 8054697 | wgEncodeRegTfbsClusteredV3 | MEF2C | score:256, expCount:1, expNums:94, expScores:256, srow:1630027 |
| 8147 | chr17 | 8054403 | 8054799 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:596, expCount:3, expNums:151,232,260, expScores:136,596,181, srow:1630028 |
| 8147 | chr17 | 8054405 | 8054840 | wgEncodeRegTfbsClusteredV3 | MAX | score:1000, expCount:5, expNums:223,296,460,511,576, expScores:1000,299,218,506,491, srow:1630029 |
| 8147 | chr17 | 8054427 | 8054946 | wgEncodeRegTfbsClusteredV3 | FOXM1 | score:326, expCount:1, expNums:90, expScores:326, srow:1630030 |
| 8147 | chr17 | 8054434 | 8054728 | wgEncodeRegTfbsClusteredV3 | NRF1 | score:1000, expCount:3, expNums:303,354,518, expScores:1000,341,278, srow:1630031 |
| 8147 | chr17 | 8054438 | 8054661 | wgEncodeRegTfbsClusteredV3 | SRF | score:404, expCount:1, expNums:113, expScores:404, srow:1630032 |
| 8147 | chr17 | 8054443 | 8054725 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:1000, expCount:3, expNums:87,138,216, expScores:618,153,1000, srow:1630033 |
| 8147 | chr17 | 8054448 | 8054877 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:229, expCount:2, expNums:215,495, expScores:229,137, srow:1630034 |
| 8147 | chr17 | 8054453 | 8054782 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:536, expCount:2, expNums:284,472, expScores:536,251, srow:1630035 |
| 8147 | chr17 | 8054457 | 8054976 | wgEncodeRegTfbsClusteredV3 | ATF2 | score:338, expCount:1, expNums:79, expScores:338, srow:1630036 |
| 8147 | chr17 | 8054465 | 8054923 | wgEncodeRegTfbsClusteredV3 | MAZ | score:536, expCount:2, expNums:297,512, expScores:536,317, srow:1630037 |
| 8147 | chr17 | 8054468 | 8054837 | wgEncodeRegTfbsClusteredV3 | EP300 | score:329, expCount:1, expNums:304, expScores:329, srow:1630038 |
| 8147 | chr17 | 8054470 | 8054739 | wgEncodeRegTfbsClusteredV3 | USF1 | score:319, expCount:3, expNums:118,243,265, expScores:319,162,260, srow:1630039 |
| 8147 | chr17 | 8054471 | 8054814 | wgEncodeRegTfbsClusteredV3 | YY1 | score:180, expCount:1, expNums:119, expScores:180, srow:1630040 |
| 8147 | chr17 | 8054483 | 8054839 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:1000, expCount:2, expNums:88,217, expScores:1000,929, srow:1630041 |
| 8147 | chr17 | 8054484 | 8054893 | wgEncodeRegTfbsClusteredV3 | TBL1XR1 | score:169, expCount:1, expNums:316, expScores:169, srow:1630042 |
| 8147 | chr17 | 8054485 | 8054876 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:272, expCount:3, expNums:100,101,129, expScores:198,272,165, srow:1630043 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 8147 | cellmeth_recounts | PrEC: 51, LNCaP: 118, DU145: 13 |  |
| 8147 | cellmeth_diffreps_PrECvsDU145 | A=82, B=16, Length=420, Event=Down, log2FC=-2.36, padj=3.83657410893019e-10 |  |
| 8147 | cellmeth_diffreps_LNCaPvsDU145 | A=136.84, B=17.77, Length=580, Event=Down, log2FC=-2.94, padj=0 |  |
| 8147 | cellexp | id=ENSG00000179094, name=PER1, PrEC=5282, str=2716, LNCaP=1008, str=1171, DU145=460, str=289 |  |
| 8147 | cellexp | id=ENSG00000263620, name=RP11-599B13.6, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 8147 | tcgaexp | gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18 |  |
| 8147 | tcgaexp | gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583 |  |
| 8147 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 8147 | tcgaexp | gene=PER1, entrez=5187, pos=chr17:8043788-8059678(-), B=10298, L=5920, M=6442, H=5598 |  |
| 8147 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 8147 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 8147 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 8147 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 8147 | tcgaexp | gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223 |  |
| 8147 | tcgaexp | gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0 |  |
| 8147 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 8147 | tcgaexp | gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0 |  |
| 8147 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 8147 | tcgaexp | gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598 |  |
| 8147 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |
| 8147 | tcgaexp | gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90 |  |
| 8147 | tcgaexp | gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2 |  |
| 8147 | tcgaexp | gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4 |  |