DMR Stats | |
---|---|
Position | chr1:7432501-7432750 (View on UCSC) |
Width | 250bp |
Genomic Context | intron |
Nearest Genes | CAMTA1 (0bp away) |
ANODEV p-value | 0.000243178877673 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
82 | CAMTA1 | 162 | uc001aoi.3 | chr1 | 6845384 | 7829766 | + | 250 | 100.0 | 0.22 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
82 | chr1 | 7432428 | 7432767 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:429, expCount:1, expNums:479, expScores:429, srow:16414 |
82 | chr1 | 7432567 | 7433006 | wgEncodeRegTfbsClusteredV3 | MYC | score:491, expCount:2, expNums:487,489, expScores:228,491, srow:16415 |
82 | chr1 | 7432624 | 7432979 | wgEncodeRegTfbsClusteredV3 | MAX | score:386, expCount:2, expNums:223,511, expScores:386,153, srow:16416 |
82 | chr1 | 7432691 | 7432926 | wgEncodeRegTfbsClusteredV3 | ATF3 | score:193, expCount:1, expNums:208, expScores:193, srow:16417 |
82 | chr1 | 7432693 | 7432948 | wgEncodeRegTfbsClusteredV3 | ATF1 | score:181, expCount:1, expNums:468, expScores:181, srow:16418 |
82 | chr1 | 7432706 | 7432969 | wgEncodeRegTfbsClusteredV3 | USF1 | score:172, expCount:1, expNums:243, expScores:172, srow:16419 |
82 | chr1 | 7432653 | 7432664 | phastConsElements100way | lod=14 | score:255, srow:27242 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
82 | cellmeth_recounts | PrEC: 43, LNCaP: 13, DU145: 8 | |
82 | cellmeth_diffreps_PrECvsLNCaP | A=64, B=10, Length=400, Event=Down, log2FC=-2.68, padj=2.763648582596e-09 | |
82 | cellmeth_diffreps_PrECvsDU145 | A=64, B=6, Length=420, Event=Down, log2FC=-3.42, padj=9.76587269016048e-12 | |
82 | cellexp | id=ENSG00000171735, name=CAMTA1, PrEC=1333, str=672, LNCaP=1796, str=1755, DU145=1524, str=1409 | |
82 | tcgameth | site:cg16652920, B=0.85, L=0.84, H=0.84 | |
82 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
82 | tcgaexp | gene=CAMTA1, entrez=23261, pos=chr1:6845384-7829766(+), B=1373, L=1307, M=1203, H=1168 | |
82 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |