DMR 849 chr2:24345701-24345900 (200bp)

DMR Stats
Positionchr2:24345701-24345900 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesFAM228B, PFN4 (0bp away)
ANODEV p-value0.00407657079524
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
849 FAM228B 16086 uc002rew.3 chr2 24299728 24392507 + 200 100.0 0.12 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) 0.0
849 PFN4 16088 uc002rfa.1 chr2 24338244 24346151 - 200 100.0 0.63 0 100.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
849 chr2 24345641 24345715 wgEncodeRegDnaseClusteredV2 2 score:178, srow:606050
849 chr2 24345741 24346115 wgEncodeRegDnaseClusteredV2 20 score:853, srow:606051
849 chr2 24345485 24345720 wgEncodeRegTfbsClusteredV3 HDAC2 score:144, expCount:1, expNums:222, expScores:144, srow:2123880
849 chr2 24345495 24345790 wgEncodeRegTfbsClusteredV3 RCOR1 score:192, expCount:1, expNums:492, expScores:192, srow:2123881
849 chr2 24345531 24345894 wgEncodeRegTfbsClusteredV3 TEAD4 score:270, expCount:1, expNums:240, expScores:270, srow:2123882
849 chr2 24345537 24346196 wgEncodeRegTfbsClusteredV3 MTA3 score:384, expCount:1, expNums:95, expScores:384, srow:2123883
849 chr2 24345706 24346301 wgEncodeRegTfbsClusteredV3 NFIC score:253, expCount:1, expNums:97, expScores:253, srow:2123884
849 chr2 24345724 24346373 wgEncodeRegTfbsClusteredV3 SMARCC1 score:193, expCount:1, expNums:371, expScores:193, srow:2123885
849 chr2 24345755 24346392 wgEncodeRegTfbsClusteredV3 ELF1 score:637, expCount:4, expNums:50,88,175,217, expScores:228,343,343,637, srow:2123886
849 chr2 24345854 24347062 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:61, expNums:32,61,62,78,104,105,123,124,130,131,147,163,168,191,192,206,207,228,229,259,275,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,445,446,465,520,521,522,523,525,563,564,577,583,585,596,599,602,613,616,619,622,632,633,634,637, expScores:316,1000,452,996,455,616,260,324,390,862,361,722,873,311,293,416,564,409,1000,332,304,345,351,182,323,379,241,1000,435,171,1000,396,196,187,132,1000,356,245,199,255,427,465,498,646,652,415,241,247,375,583,292,242,145,310,475,129,669,439,480,265,200, srow:2123887
849 chr2 24345858 24346992 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:505, srow:2123888
849 chr2 24345898 24346520 wgEncodeRegTfbsClusteredV3 E2F4 score:152, expCount:2, expNums:385,562, expScores:133,152, srow:2123889
849 chr2 24345753 24345770 tfbsConsSites V$FOXJ2_01 score:876, zScore:1.64, srow:2568629
849 chr2 24343991 24345990 cpgShore — values(x.gr)[overs$srow, ]:26570
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
849 cellmeth_recounts PrEC: 0, LNCaP: 1, DU145: 0
849 cellexp id=ENSG00000176732, name=PFN4, PrEC=16, str=60, LNCaP=38, str=38, DU145=111, str=108
849 cellexp id=ENSG00000219626, name=FAM228B, PrEC=94, str=164, LNCaP=320, str=183, DU145=134, str=65
849 tcgaexp gene=PFN4, entrez=375189, pos=chr2:24338244-24346151(-), B=12, L=11, M=15, H=14
849 tcgaexp gene=FAM228B, entrez=375190, pos=chr2:24299728-24397519(+), B=281, L=229, M=202, H=185