DMR Stats | |
---|---|
Position | chr1:7778201-7778400 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | CAMTA1 (0bp away) |
ANODEV p-value | 0.00328965207693 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
85 | CAMTA1 | 162 | uc001aoi.3 | chr1 | 6845384 | 7829766 | + | 200 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (100), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
85 | CAMTA1 | 162 | uc001aok.4 | chr1 | 7740148 | 7829766 | + | 200 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
85 | CAMTA1 | 162 | uc010nzv.1 | chr1 | 7732054 | 7805082 | + | 200 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
85 | chr1 | 7778146 | 7778475 | wgEncodeRegDnaseClusteredV2 | 4 | score:776, srow:6210 |
85 | chr1 | 7777997 | 7778406 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:341, expCount:1, expNums:25, expScores:341, srow:17043 |
85 | chr1 | 7778120 | 7778429 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:226, expCount:2, expNums:251,255, expScores:158,226, srow:17044 |
85 | chr1 | 7778137 | 7778426 | wgEncodeRegTfbsClusteredV3 | FOXA2 | score:230, expCount:1, expNums:179, expScores:230, srow:17045 |
85 | chr1 | 7778151 | 7778430 | wgEncodeRegTfbsClusteredV3 | FOXA1 | score:266, expCount:1, expNums:178, expScores:266, srow:17046 |
85 | chr1 | 7778166 | 7778409 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:279, expCount:1, expNums:216, expScores:279, srow:17047 |
85 | chr1 | 7778376 | 7778390 | tfbsConsSites | V$TST1_01 | score:859, zScore:2.29, srow:14511 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
85 | cellmeth_recounts | PrEC: 126, LNCaP: 25, DU145: 8 | |
85 | cellmeth_diffreps_PrECvsLNCaP | A=192, B=22, Length=480, Event=Down, log2FC=-3.13, padj=0 | |
85 | cellmeth_diffreps_PrECvsDU145 | A=192, B=7, Length=480, Event=Down, log2FC=-4.78, padj=0 | |
85 | cellmeth_diffreps_LNCaPvsDU145 | A=20.31, B=1.87, Length=240, Event=Down, log2FC=-3.44, padj=0.00280247687576882 | |
85 | cellexp | id=ENSG00000171735, name=CAMTA1, PrEC=1333, str=672, LNCaP=1796, str=1755, DU145=1524, str=1409 | |
85 | tcgameth | site:cg08941669, B=0.9, L=0.88, H=0.87 | |
85 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
85 | tcgaexp | gene=CAMTA1, entrez=23261, pos=chr1:6845384-7829766(+), B=1373, L=1307, M=1203, H=1168 | |
85 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |