DMR 8508 chr18:1406501-1406850 (350bp)
| DMR Stats | |
|---|---|
| Position | chr18:1406501-1406850 (View on UCSC) |
| Width | 350bp |
| Genomic Context | promoter |
| Nearest Genes | LINC00470 (0bp away) |
| ANODEV p-value | 0.00916475323815 |
| Frequencies | Benign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8508 | LINC00470 | 13640 | uc002kld.1 | chr18 | 1268312 | 1407181 | - | 350 | 100.0 | 0.1 | 1 | 48.29 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 8508 | chr18 | 1406846 | 1407030 | wgEncodeRegDnaseClusteredV2 | 2 | score:210, srow:524867 |
| 8508 | chr18 | 1406756 | 1407626 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:402, expCount:1, expNums:30, expScores:398, srow:1825373 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 8508 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 27 |  |
| 8508 | cellmeth_diffreps_PrECvsDU145 | A=0, B=18, Length=380, Event=Up, log2FC=Inf, padj=3.84450226825195e-05 |  |
| 8508 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=16.84, Length=380, Event=Up, log2FC=Inf, padj=0.000254089794507285 |  |
| 8508 | cellexp | id=ENSG00000132204, name=LINC00470, PrEC=17, str=5, LNCaP=1, str=0, DU145=3, str=3 |  |
| 8508 | tcgaexp | gene=LINC00470, entrez=56651, pos=chr18:1254390-1407181(-), B=12, L=3, M=7, H=32 |  |