DMR 855 chr2:25383601-25383950 (350bp)
| DMR Stats | |
|---|---|
| Position | chr2:25383601-25383950 (View on UCSC) |
| Width | 350bp |
| Genomic Context | 3' end |
| Nearest Genes | POMC (0bp away) |
| ANODEV p-value | 8.51209312376e-05 |
| Frequencies | Benign: 5.0 (71.43%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 855 | POMC | 16098 | uc002rfy.1 | chr2 | 25383722 | 25391559 | - | 229 | 65.43 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (65.43) | 100.0 |
| 855 | POMC | 16098 | uc002rfz.1 | chr2 | 25383722 | 25391559 | - | 229 | 65.43 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (65.43) | 100.0 |
| 855 | POMC | 16098 | uc002rga.1 | chr2 | 25383722 | 25391559 | - | 229 | 65.43 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (65.43) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 855 | chr2 | 25383706 | 25383935 | wgEncodeRegDnaseClusteredV2 | 2 | score:241, srow:606700 |
| 855 | chr2 | 25383946 | 25384655 | wgEncodeRegDnaseClusteredV2 | 39 | score:963, srow:606701 |
| 855 | chr2 | 25383859 | 25384800 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:15, expNums:105,123,124,130,131,283,306,326,328,330,332,334,336,338,340, expScores:1000,415,492,626,1000,136,361,437,1000,1000,1000,463,568,1000,1000, srow:2125678 |
| 855 | chr2 | 25383599 | 25383609 | tfbsConsSites | V$EVI1_05 | score:840, zScore:1.85, srow:2570659 |
| 855 | chr2 | 25383769 | 25383782 | phastConsElements100way | lod=32 | score:337, srow:4435222 |
| 855 | chr2 | 25383801 | 25383822 | phastConsElements100way | lod=68 | score:411, srow:4435223 |
| 855 | chr2 | 25383934 | 25383939 | phastConsElements100way | lod=17 | score:274, srow:4435224 |
| 855 | chr2 | 25383947 | 25384006 | phastConsElements100way | lod=373 | score:580, srow:4435225 |
| 855 | chr2 | 25383940 | 25384763 | cpgIsland | CpG: 81 | length:824, cpgNum:81, gcNum:554, perCpg:19.7, perGc:67.2, obsExp:0.87, srow:14789 |
| 855 | chr2 | 25381940 | 25383939 | cpgShore | — | values(x.gr)[overs$srow, ]:26589 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 855 | cellmeth_recounts | PrEC: 39, LNCaP: 18, DU145: 20 |  |
| 855 | cellmeth_diffreps_PrECvsLNCaP | A=624, B=186, Length=1100, Event=Down, log2FC=-1.75, padj=0 |  |
| 855 | cellmeth_diffreps_PrECvsDU145 | A=624, B=38, Length=1160, Event=Down, log2FC=-4.04, padj=0 |  |
| 855 | cellmeth_diffreps_LNCaPvsDU145 | A=202.05, B=32.74, Length=1000, Event=Down, log2FC=-2.63, padj=0 |  |
| 855 | cellexp | id=ENSG00000115138, name=POMC, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 855 | tcgameth | site:cg10045137, B=0.91, L=0.92, H=0.92 |  |
| 855 | tcgameth | site:cg23809645, B=0.76, L=0.69, H=0.65 |  |
| 855 | tcgaexp | gene=POMC, entrez=5443, pos=chr2:25383722-25391559(-), B=71, L=47, M=32, H=17 |  |