DMR 867 chr2:27333501-27333900 (400bp)
| DMR Stats | |
|---|---|
| Position | chr2:27333501-27333900 (View on UCSC) |
| Width | 400bp |
| Genomic Context | promoter |
| Nearest Genes | CGREF1 (0bp away) |
| ANODEV p-value | 0.0228623924889 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 867 | CGREF1 | 16131 | uc002riq.3 | chr2 | 27323462 | 27341773 | - | 400 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 867 | CGREF1 | 16131 | uc002rir.2 | chr2 | 27323947 | 27341995 | - | 400 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 867 | CGREF1 | 16131 | uc010eys.2 | chr2 | 27323947 | 27341773 | - | 400 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 867 | CGREF1 | 16131 | uc010ylf.2 | chr2 | 27322221 | 27333970 | - | 400 | 100.0 | 0.24 | 0 | 100.0 | E1 (90), I1 (10), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 867 | CGREF1 | 16131 | uc021vez.1 | chr2 | 27322221 | 27341995 | - | 400 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 867 | CGREF1 | 16131 | uc021vfa.1 | chr2 | 27323462 | 27341995 | - | 400 | 100.0 | 0.23 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 867 | chr2 | 27333811 | 27334190 | wgEncodeRegTfbsClusteredV3 | NFYB | score:375, expCount:2, expNums:302,517, expScores:215,375, srow:2131723 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 867 | cellmeth_recounts | PrEC: 94, LNCaP: 265, DU145: 26 |  |
| 867 | cellmeth_diffreps_PrECvsLNCaP | A=124, B=200, Length=280, Event=Up, log2FC=0.69, padj=0.000839276417104928 |  |
| 867 | cellmeth_diffreps_PrECvsDU145 | A=141, B=20, Length=460, Event=Down, log2FC=-2.82, padj=0 |  |
| 867 | cellmeth_diffreps_LNCaPvsDU145 | A=224.5, B=18.71, Length=500, Event=Down, log2FC=-3.58, padj=0 |  |
| 867 | cellexp | id=ENSG00000138028, name=CGREF1, PrEC=59, str=181, LNCaP=2083, str=1617, DU145=1748, str=1450 |  |
| 867 | tcgaexp | gene=CGREF1, entrez=10669, pos=chr2:27322221-27341995(-), B=534, L=1759, M=1833, H=1676 |  |