DMR 88 chr1:7993201-7993450 (250bp)

DMR Stats
Positionchr1:7993201-7993450 (View on UCSC)
Width250bp
Genomic Contextexon
Nearest GenesTNFRSF9 (0bp away)
ANODEV p-value0.0092210082262
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
88 TNFRSF9 166 uc001aot.3 chr1 7975931 8003225 - 250 100.0 0.22 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (38), E8 (54), I8 (8.4), E9 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
88 chr1 7993310 7993323 tfbsConsSites V$ATF_01 score:868, zScore:2.43, srow:14945
88 chr1 7993311 7993322 tfbsConsSites V$CREB_Q4 score:877, zScore:2, srow:14946
88 chr1 7993221 7993221 cosmic COSM536258 srow:4118
88 chr1 7993225 7993225 cosmic COSM364873 srow:4119
88 chr1 7993230 7993231 cosmic COSM1474213 srow:4120
88 chr1 7993247 7993247 cosmic COSM167524 srow:4121
88 chr1 7993258 7993258 cosmic COSM414781 srow:4122
88 chr1 7993277 7993277 cosmic COSM1503625 srow:4123
88 chr1 7993281 7993281 cosmic COSM1229887 srow:4124
88 chr1 7993307 7993307 cosmic COSM912436 srow:4125
88 chr1 7993313 7993313 cosmic COSM912437 srow:4126
88 chr1 7993346 7993346 cosmic COSM1561055 srow:4127
88 chr1 7993354 7993354 cosmic COSM1686949 srow:4128
88 chr1 7993217 7993230 phastConsElements100way lod=63 score:404, srow:29188
88 chr1 7993236 7993249 phastConsElements100way lod=27 score:320, srow:29189
88 chr1 7993295 7993298 phastConsElements100way lod=13 score:247, srow:29190
88 chr1 7993318 7993321 phastConsElements100way lod=15 score:262, srow:29191
88 chr1 7993326 7993327 phastConsElements100way lod=15 score:262, srow:29192
  • 18 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
88 cellmeth_recounts PrEC: 45, LNCaP: 0, DU145: 8
88 cellmeth_diffreps_PrECvsLNCaP A=68, B=0, Length=420, Event=Down, log2FC=-Inf, padj=0
88 cellmeth_diffreps_PrECvsDU145 A=68, B=6, Length=420, Event=Down, log2FC=-3.5, padj=8.91098394546962e-13
88 cellexp id=ENSG00000049249, name=TNFRSF9, PrEC=3, str=2, LNCaP=5, str=1, DU145=99, str=70
88 tcgaexp gene=TNFRSF9, entrez=3604, pos=chr1:7975931-8003225(-), B=9, L=10, M=12, H=20
88 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
88 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305