DMR Stats
Positionchr1:8395101-8395250 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesSLC45A1 (0bp away)
ANODEV p-value0.0240440441191
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 0.0 (0.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
89 SLC45A1 170 uc001apb.3 chr1 8384390 8404227 + 150 100.0 0.11 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
89 SLC45A1 170 uc001apc.3 chr1 8390198 8404227 + 150 100.0 0.11 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
89 chr1 8393344 8395343 cpgShore values(x.gr)[overs$srow, ]:622
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
89 cellmeth_recounts PrEC: 3, LNCaP: 1, DU145: 5
89 cellmeth_diffreps_PrECvsLNCaP A=13, B=0, Length=300, Event=Down, log2FC=-Inf, padj=0.000827318446465587
89 cellmeth_diffreps_PrECvsLNCaP A=340, B=25, Length=680, Event=Down, log2FC=-3.77, padj=0
89 cellmeth_diffreps_PrECvsDU145 A=12, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.00174045876043459
89 cellmeth_diffreps_PrECvsDU145 A=340, B=11, Length=660, Event=Down, log2FC=-4.95, padj=0
89 cellexp id=ENSG00000162426, name=SLC45A1, PrEC=29, str=12, LNCaP=91, str=48, DU145=221, str=79
89 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
89 tcgaexp gene=SLC45A1, entrez=50651, pos=chr1:8384390-8404227(+), B=339, L=314, M=328, H=358
89 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305