DMR 94 chr1:9320051-9320250 (200bp)

DMR Stats
Positionchr1:9320051-9320250 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesH6PD (0bp away)
ANODEV p-value0.0112057575451
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
94 H6PD 181 uc001apt.3 chr1 9294863 9331394 + 200 100.0 0.27 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
94 chr1 9318819 9320361 phastConsElements100way lod=947 score:672, srow:33745
94 chr1 9320203 9322202 cpgShelf — values(x.gr)[overs$srow, ]:451
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
94 cellmeth_recounts PrEC: 221, LNCaP: 31, DU145: 22
94 cellmeth_diffreps_PrECvsLNCaP A=429, B=50, Length=840, Event=Down, log2FC=-3.1, padj=0
94 cellmeth_diffreps_PrECvsDU145 A=429, B=30, Length=840, Event=Down, log2FC=-3.84, padj=0
94 cellexp id=ENSG00000049239, name=H6PD, PrEC=3604, str=4527, LNCaP=5612, str=4969, DU145=3444, str=3028
94 tcgaexp gene=H6PD, entrez=9563, pos=chr1:9294863-9331394(+), B=7314, L=6689, M=6614, H=5703
94 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
94 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305