DMR 95 chr1:9388401-9388550 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:9388401-9388550 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | SPSB1 (0bp away) |
| ANODEV p-value | 0.00556595515966 |
| Frequencies | Benign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95 | SPSB1 | 182 | uc010oae.2 | chr1 | 9352941 | 9429590 | + | 150 | 100.0 | 0.27 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 95 | chr1 | 9388221 | 9388415 | wgEncodeRegDnaseClusteredV2 | 2 | score:134, srow:7601 |
| 95 | chr1 | 9388454 | 9388464 | phastConsElements100way | lod=15 | score:262, srow:34040 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 95 | cellmeth_recounts | PrEC: 2, LNCaP: 0, DU145: 0 |  |
| 95 | cellexp | id=ENSG00000171621, name=SPSB1, PrEC=1612, str=4027, LNCaP=293, str=279, DU145=1418, str=1552 |  |
| 95 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 95 | tcgaexp | gene=SPSB1, entrez=80176, pos=chr1:9352941-9429590(+), B=1546, L=984, M=1109, H=1461 |  |
| 95 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |