DMR 9599 chr22:19753951-19754250 (300bp)

DMR Stats
Positionchr22:19753951-19754250 (View on UCSC)
Width300bp
Genomic Context3' end
Nearest GenesTBX1 (0bp away)
ANODEV p-value0.0296934391215
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
9599 TBX1 19070 uc002zqa.1 chr22 19744226 19754855 + 300 100.0 0.09 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) 100.0
9599 TBX1 19070 uc002zqb.3 chr22 19744226 19767068 + 300 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0) 0.0
9599 TBX1 19070 uc002zqc.3 chr22 19744226 19771112 + 300 100.0 0.09 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
9599 chr22 19752561 19753975 wgEncodeRegDnaseClusteredV2 61 score:1000, srow:756633
9599 chr22 19753986 19755855 wgEncodeRegDnaseClusteredV2 66 score:1000, srow:756634
9599 chr22 19748450 19755097 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:8, expNums:1,3,6,13,21,36,40,43, expScores:305,138,371,371,510,234,243,363, srow:2635642
9599 chr22 19753186 19754080 wgEncodeRegTfbsClusteredV3 POLR2A score:371, expCount:4, expNums:163,229,362,577, expScores:238,371,148,184, srow:2635691
9599 chr22 19754049 19754780 wgEncodeRegTfbsClusteredV3 PHF8 score:689, expCount:1, expNums:30, expScores:689, srow:2635698
9599 chr22 19754165 19754785 wgEncodeRegTfbsClusteredV3 UBTF score:406, expCount:2, expNums:548,549, expScores:239,160, srow:2635699
9599 chr22 19754164 19754175 tfbsConsSites V$EGR2_01 score:846, zScore:1.98, srow:3211158
9599 chr22 19754164 19754175 tfbsConsSites V$EGR3_01 score:844, zScore:2.03, srow:3211159
9599 chr22 19754173 19754186 tfbsConsSites V$GATA1_02 score:847, zScore:1.94, srow:3211160
9599 chr22 19754210 19754237 tfbsConsSites V$PAX5_01 score:764, zScore:1.71, srow:3211161
9599 chr22 19754217 19754235 tfbsConsSites V$PAX2_01 score:780, zScore:1.91, srow:3211162
9599 chr22 19754219 19754238 tfbsConsSites V$P53_01 score:712, zScore:2.35, srow:3211163
9599 chr22 19754220 19754237 tfbsConsSites V$MIF1_01 score:781, zScore:1.99, srow:3211164
9599 chr22 19753942 19753954 phastConsElements100way lod=39 score:356, srow:5541876
9599 chr22 19753963 19753968 phastConsElements100way lod=25 score:312, srow:5541877
9599 chr22 19753971 19753978 phastConsElements100way lod=15 score:262, srow:5541878
9599 chr22 19753989 19753999 phastConsElements100way lod=57 score:394, srow:5541879
9599 chr22 19754001 19754017 phastConsElements100way lod=56 score:392, srow:5541880
9599 chr22 19754025 19754026 phastConsElements100way lod=23 score:304, srow:5541881
9599 chr22 19754031 19754032 phastConsElements100way lod=17 score:274, srow:5541882
9599 chr22 19754070 19754071 phastConsElements100way lod=13 score:247, srow:5541883
9599 chr22 19754074 19754094 phastConsElements100way lod=76 score:422, srow:5541884
9599 chr22 19754097 19754110 phastConsElements100way lod=58 score:395, srow:5541885
9599 chr22 19754115 19754116 phastConsElements100way lod=13 score:247, srow:5541886
9599 chr22 19754127 19754218 phastConsElements100way lod=481 score:605, srow:5541887
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  • 25 of 28 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
9599 cellmeth_recounts PrEC: 177, LNCaP: 2026, DU145: 4
9599 cellmeth_diffreps_PrECvsLNCaP A=1437, B=7146, Length=3740, Event=Up, log2FC=2.31, padj=0
9599 cellmeth_diffreps_PrECvsDU145 A=982, B=7, Length=2120, Event=Down, log2FC=-7.13, padj=0
9599 cellmeth_diffreps_LNCaPvsDU145 A=8169.64, B=68.29, Length=5100, Event=Down, log2FC=-6.9, padj=0
9599 cellexp id=ENSG00000184058, name=TBX1, PrEC=12, str=16, LNCaP=2340, str=1190, DU145=32, str=3
9599 tcgaexp gene=TBX1, entrez=6899, pos=chr22:19744226-19771112(+), B=319, L=910, M=900, H=902