DMR 9673 chr22:34238101-34238300 (200bp)
| DMR Stats | |
|---|---|
| Position | chr22:34238101-34238300 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | LARGE (0bp away) |
| ANODEV p-value | 4.8840586205e-09 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9673 | LARGE | 19377 | uc003and.4 | chr22 | 33669062 | 34316416 | - | 200 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 9673 | LARGE | 19377 | uc003ane.4 | chr22 | 33669062 | 34316416 | - | 200 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 9673 | LARGE | 19377 | uc010gwp.3 | chr22 | 33669062 | 34316416 | - | 200 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 9673 | LARGE | 19377 | uc011ame.2 | chr22 | 33669062 | 34318584 | - | 200 | 100.0 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 9673 | LARGE | 19377 | uc011amf.2 | chr22 | 33669062 | 34318584 | - | 200 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 9673 | chr22 | 34238046 | 34238370 | wgEncodeRegDnaseClusteredV2 | 8 | score:893, srow:767180 |
| 9673 | chr22 | 34238026 | 34238305 | wgEncodeRegTfbsClusteredV3 | EP300 | score:144, expCount:1, expNums:99, expScores:144, srow:2675184 |
| 9673 | chr22 | 34238027 | 34238219 | wgEncodeRegTfbsClusteredV3 | NFIC | score:470, expCount:1, expNums:97, expScores:470, srow:2675185 |
| 9673 | chr22 | 34238046 | 34238291 | wgEncodeRegTfbsClusteredV3 | MEF2A | score:776, expCount:1, expNums:93, expScores:776, srow:2675186 |
| 9673 | chr22 | 34238128 | 34238256 | wgEncodeRegTfbsClusteredV3 | MEF2C | score:450, expCount:1, expNums:94, expScores:450, srow:2675187 |
| 9673 | chr22 | 34238156 | 34238168 | tfbsConsSites | V$RORA2_01 | score:886, zScore:2.46, srow:3236099 |
| 9673 | chr22 | 34238156 | 34238177 | tfbsConsSites | V$MEF2_02 | score:825, zScore:2.51, srow:3236100 |
| 9673 | chr22 | 34238090 | 34238103 | phastConsElements100way | lod=33 | score:340, srow:5597277 |
| 9673 | chr22 | 34238106 | 34238121 | phastConsElements100way | lod=53 | score:387, srow:5597278 |
| 9673 | chr22 | 34238131 | 34238133 | phastConsElements100way | lod=13 | score:247, srow:5597279 |
| 9673 | chr22 | 34238140 | 34238173 | phastConsElements100way | lod=115 | score:463, srow:5597280 |
| 9673 | chr22 | 34238196 | 34238209 | phastConsElements100way | lod=49 | score:379, srow:5597281 |
| 9673 | chr22 | 34238251 | 34238298 | phastConsElements100way | lod=122 | score:469, srow:5597282 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 9673 | cellmeth_recounts | PrEC: 9, LNCaP: 0, DU145: 3 |  |
| 9673 | cellmeth_diffreps_PrECvsLNCaP | A=13, B=0, Length=340, Event=Down, log2FC=-Inf, padj=0.000827318446465587 |  |
| 9673 | cellmeth_diffreps_PrECvsDU145 | A=12, B=0, Length=220, Event=Down, log2FC=-Inf, padj=0.00174045876043459 |  |
| 9673 | cellexp | id=ENSG00000133424, name=LARGE, PrEC=434, str=890, LNCaP=338, str=266, DU145=15, str=1 |  |
| 9673 | tcgaexp | gene=LARGE, entrez=9215, pos=chr22:33669062-34318584(-), B=2853, L=1787, M=1314, H=1175 |  |