DMR 10209 chr1:9009351-9009550 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:9009351-9009550 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | CA6 (0bp away) |
| ANODEV p-value | 0.0115743084236 |
| Frequencies | Benign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10209 | CA6 | 175 | uc001apm.4 | chr1 | 9005893 | 9035148 | + | 200 | 100.0 | 4.84 | 0 | 0.0 | E1 (0), I1 (0), E2 (75.5), I2 (25), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 10209 | CA6 | 175 | uc009vmn.4 | chr1 | 9005893 | 9035148 | + | 200 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 10209 | CA6 | 175 | uc021ofu.2 | chr1 | 9005893 | 9012710 | + | 200 | 100.0 | 0.14 | 1 | 0.0 | E1 (0), I1 (0), E2 (75.5), I2 (25), E3 (0), I3 (0), E4 (0) | 0.0 |
| 10209 | CA6 | 175 | uc031plc.1 | chr1 | 9005893 | 9034503 | + | 200 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (75.5), I2 (25), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 10209 | CA6 | 175 | uc031pld.1 | chr1 | 9005893 | 9035148 | + | 200 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10209 | chr1 | 9009450 | 9009454 | phastConsElements100way | lod=48 | score:377, srow:32865 |
| 10209 | chr1 | 9009468 | 9009469 | phastConsElements100way | lod=13 | score:247, srow:32866 |
| 10209 | chr1 | 9009474 | 9009476 | phastConsElements100way | lod=30 | score:330, srow:32867 |
| 10209 | chr1 | 9009480 | 9009483 | phastConsElements100way | lod=50 | score:381, srow:32868 |
| 10209 | chr1 | 9009485 | 9009490 | phastConsElements100way | lod=63 | score:404, srow:32869 |
| 10209 | chr1 | 9009492 | 9009507 | phastConsElements100way | lod=159 | score:495, srow:32870 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10209 | cellmeth_recounts | PrEC: 1, LNCaP: 1, DU145: 0 |  |
| 10209 | cellexp | id=ENSG00000131686, name=CA6, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 10209 | tcgaexp | gene=CA6, entrez=765, pos=chr1:9005893-9035148(+), B=1, L=1, M=2, H=0 |  |
| 10209 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10209 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |