DMR 10241 chr1:10713451-10713650 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:10713451-10713650 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | CASZ1 (0bp away) |
| ANODEV p-value | 0.00403589015301 |
| Frequencies | Benign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10241 | CASZ1 | 200 | uc001aro.4 | chr1 | 10696666 | 10856733 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
| 10241 | CASZ1 | 200 | uc001arp.2 | chr1 | 10707263 | 10856733 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 10241 | CASZ1 | 200 | uc009vmx.2 | chr1 | 10713041 | 10754507 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (100) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 10241 | chr1 | 10713589 | 10713592 | phastConsElements100way | lod=36 | score:348, srow:40117 |
| 10241 | chr1 | 10713595 | 10713601 | phastConsElements100way | lod=37 | score:351, srow:40118 |
| 10241 | chr1 | 10713604 | 10713605 | phastConsElements100way | lod=28 | score:323, srow:40119 |
| 10241 | chr1 | 10713607 | 10713611 | phastConsElements100way | lod=42 | score:363, srow:40120 |
| 10241 | chr1 | 10713613 | 10713616 | phastConsElements100way | lod=29 | score:327, srow:40121 |
| 10241 | chr1 | 10713622 | 10713626 | phastConsElements100way | lod=23 | score:304, srow:40122 |
| 10241 | chr1 | 10713631 | 10713635 | phastConsElements100way | lod=25 | score:312, srow:40123 |
| 10241 | chr1 | 10713637 | 10713638 | phastConsElements100way | lod=29 | score:327, srow:40124 |
| 10241 | chr1 | 10713640 | 10713647 | phastConsElements100way | lod=51 | score:383, srow:40125 |
| 10241 | chr1 | 10713649 | 10713659 | phastConsElements100way | lod=69 | score:413, srow:40126 |
| 10241 | chr1 | 10711839 | 10713838 | cpgShore | — | values(x.gr)[overs$srow, ]:707 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 10241 | cellmeth_recounts | PrEC: 73, LNCaP: 9, DU145: 4 |  |
| 10241 | cellmeth_diffreps_PrECvsLNCaP | A=1458, B=156, Length=1500, Event=Down, log2FC=-3.22, padj=0 |  |
| 10241 | cellmeth_diffreps_PrECvsDU145 | A=1458, B=41, Length=1500, Event=Down, log2FC=-5.15, padj=0 |  |
| 10241 | cellexp | id=ENSG00000130940, name=CASZ1, PrEC=524, str=547, LNCaP=2281, str=1784, DU145=1216, str=750 |  |
| 10241 | cellexp | id=ENSG00000272078, name=RP4-734G22.3, PrEC=38, str=7, LNCaP=75, str=39, DU145=21, str=37 |  |
| 10241 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 10241 | tcgaexp | gene=CASZ1, entrez=54897, pos=chr1:10696666-10856733(-), B=4089, L=4912, M=4982, H=5406 |  |
| 10241 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |