DMR 1268 chr2:171573651-171573900 (250bp)

DMR Stats
Positionchr2:171573651-171573900 (View on UCSC)
Width250bp
Genomic Context3' end
Nearest GenesSP5 (0bp away)
ANODEV p-value5.89420455157e-05
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
1268 SP5 17256 uc002uge.3 chr2 171571857 171574498 + 250 100.0 0.14 0 0.0 E1 (0), I1 (0), E2 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1268 chr2 171573696 171573708 tfbsConsSites V$CHOP_01 score:838, zScore:1.89, srow:2851638
1268 chr2 171573750 171573761 tfbsConsSites V$LMO2COM_01 score:946, zScore:2.1, srow:2851639
1268 chr2 171573750 171573761 tfbsConsSites V$MYOD_01 score:912, zScore:2.1, srow:2851640
1268 chr2 171573751 171573772 tfbsConsSites V$TCF11MAFG_01 score:765, zScore:2.11, srow:2851641
1268 chr2 171573786 171573804 tfbsConsSites V$PAX2_01 score:774, zScore:1.78, srow:2851642
1268 chr2 171573794 171573811 tfbsConsSites V$CEBP_C score:824, zScore:2.08, srow:2851643
1268 chr2 171573799 171573806 tfbsConsSites V$E2F_02 score:905, zScore:2.16, srow:2851644
1268 chr2 171573875 171573902 tfbsConsSites V$PAX5_02 score:765, zScore:1.72, srow:2851645
1268 chr2 171573881 171573901 tfbsConsSites V$PAX4_01 score:853, zScore:2.67, srow:2851646
1268 chr2 171573664 171573664 cosmic COSM1613685 srow:688235
1268 chr2 171573716 171573716 cosmic COSM1009461 srow:688236
1268 chr2 171573732 171573732 cosmic COSM1401223 srow:688237
1268 chr2 171573740 171573740 cosmic COSM1266525 srow:688238
1268 chr2 171573752 171573752 cosmic COSM1240286 srow:688239
1268 chr2 171573769 171573769 cosmic COSM717766 srow:688240
1268 chr2 171573780 171573780 cosmic COSM1691381 srow:688241
1268 chr2 171573821 171573821 cosmic COSM1009462 srow:688242
1268 chr2 171573621 171573718 phastConsElements100way lod=1050 score:682, srow:4941924
1268 chr2 171573720 171573736 phastConsElements100way lod=160 score:496, srow:4941925
1268 chr2 171573738 171573769 phastConsElements100way lod=386 score:583, srow:4941926
1268 chr2 171573771 171573786 phastConsElements100way lod=166 score:500, srow:4941927
1268 chr2 171573789 171573790 phastConsElements100way lod=39 score:356, srow:4941928
1268 chr2 171573792 171573793 phastConsElements100way lod=17 score:274, srow:4941929
1268 chr2 171573795 171573802 phastConsElements100way lod=63 score:404, srow:4941930
1268 chr2 171573804 171573829 phastConsElements100way lod=288 score:554, srow:4941931

Omics Overlaps

Dmrid Omic Set Data Plot
1268 cellmeth_recounts PrEC: 138, LNCaP: 1546, DU145: 18
1268 cellmeth_diffreps_PrECvsLNCaP A=402, B=4269, Length=2660, Event=Up, log2FC=3.41, padj=0
1268 cellmeth_diffreps_PrECvsDU145 A=395, B=41, Length=1480, Event=Down, log2FC=-3.27, padj=0
1268 cellmeth_diffreps_LNCaPvsDU145 A=4563.75, B=46.77, Length=2640, Event=Down, log2FC=-6.61, padj=0
1268 cellexp id=ENSG00000204335, name=SP5, PrEC=4, str=0, LNCaP=2, str=0, DU145=98, str=73
1268 tcgameth site:cg00858840, B=0.5, L=0.64, H=0.61
1268 tcgameth site:cg21829923, B=0.63, L=0.75, H=0.73
1268 tcgaexp gene=SP5, entrez=389058, pos=chr2:171571857-171574498(+), B=174, L=495, M=434, H=410