DMR 1274 chr2:172944901-172945350 (450bp)
| DMR Stats | |
|---|---|
| Position | chr2:172944901-172945350 (View on UCSC) |
| Width | 450bp |
| Genomic Context | 3' end |
| Nearest Genes | METAP1D (0bp away) |
| ANODEV p-value | 0.00366141319931 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1274 | METAP1D | 17269 | uc002uhk.3 | chr2 | 172864804 | 172945587 | + | 450 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (7.56), I9 (27.11), E10 (65.56) | 100.0 |
| 1274 | METAP1D | 17269 | uc010zdw.2 | chr2 | 172864804 | 172945587 | + | 450 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (7.56), I9 (27.11), E10 (65.56) | 100.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1274 | chr2 | 172945111 | 172945121 | phastConsElements100way | lod=64 | score:405, srow:4948989 |
| 1274 | chr2 | 172945126 | 172945135 | phastConsElements100way | lod=62 | score:402, srow:4948990 |
| 1274 | chr2 | 172944989 | 172945384 | cpgIsland | CpG: 36 | length:396, cpgNum:36, gcNum:235, perCpg:18.2, perGc:59.3, obsExp:1.06, srow:15708 |
| 1274 | chr2 | 172942989 | 172944988 | cpgShore | — | values(x.gr)[overs$srow, ]:28298 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1274 | cellmeth_recounts | PrEC: 116, LNCaP: 21, DU145: 23 |  |
| 1274 | cellmeth_diffreps_PrECvsLNCaP | A=174, B=17, Length=640, Event=Down, log2FC=-3.36, padj=0 |  |
| 1274 | cellmeth_diffreps_PrECvsDU145 | A=174, B=18, Length=620, Event=Down, log2FC=-3.27, padj=0 |  |
| 1274 | cellexp | id=ENSG00000172878, name=METAP1D, PrEC=546, str=187, LNCaP=832, str=841, DU145=610, str=732 |  |
| 1274 | tcgameth | site:cg14996143, B=0.6, L=0.73, H=0.72 |  |
| 1274 | tcgaexp | gene=METAP1D, entrez=254042, pos=chr2:172864804-172945587(+), B=152, L=227, M=207, H=205 |  |