DMR 12939 chr3:126180451-126180650 (200bp)
| DMR Stats | |
|---|---|
| Position | chr3:126180451-126180650 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | ZXDC (0bp away) |
| ANODEV p-value | 0.000449473339065 |
| Frequencies | Benign: 6.0 (85.71%), Low: 0.0 (0.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12939 | ZXDC | 20656 | uc003eiv.3 | chr3 | 126156444 | 126194762 | - | 200 | 100.0 | 0.7 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 12939 | ZXDC | 20656 | uc003eix.2 | chr3 | 126169959 | 126194762 | - | 200 | 100.0 | 1.84 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) | 0.0 |
| 12939 | ZXDC | 20656 | uc010hsh.3 | chr3 | 126156444 | 126194762 | - | 200 | 100.0 | 0.68 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 12939 | chr3 | 126180577 | 126180583 | phastConsElements100way | lod=42 | score:363, srow:6103105 |
| 12939 | chr3 | 126180589 | 126180592 | phastConsElements100way | lod=15 | score:262, srow:6103106 |
| 12939 | chr3 | 126180604 | 126180604 | phastConsElements100way | lod=17 | score:274, srow:6103107 |
| 12939 | chr3 | 126180611 | 126180628 | phastConsElements100way | lod=53 | score:387, srow:6103108 |
| 12939 | chr3 | 126180637 | 126180638 | phastConsElements100way | lod=22 | score:300, srow:6103109 |
| 12939 | chr3 | 126180640 | 126180655 | phastConsElements100way | lod=72 | score:417, srow:6103110 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 12939 | cellmeth_recounts | PrEC: 13, LNCaP: 0, DU145: 0 |  |
| 12939 | cellmeth_diffreps_PrECvsLNCaP | A=20, B=0, Length=380, Event=Down, log2FC=-Inf, padj=7.90773854123128e-06 |  |
| 12939 | cellmeth_diffreps_PrECvsDU145 | A=20, B=0, Length=380, Event=Down, log2FC=-Inf, padj=1.02756470669418e-05 |  |
| 12939 | cellexp | id=ENSG00000070476, name=ZXDC, PrEC=1616, str=1212, LNCaP=1963, str=1491, DU145=972, str=804 |  |
| 12939 | tcgaexp | gene=ZXDC, entrez=79364, pos=chr3:126156444-126194762(-), B=2810, L=2844, M=2851, H=3164 |  |