DMR 1411 chr2:230222551-230223000 (450bp)
| DMR Stats | |
|---|---|
| Position | chr2:230222551-230223000 (View on UCSC) |
| Width | 450bp |
| Genomic Context | 3' end |
| Nearest Genes | DNER (0bp away) |
| ANODEV p-value | 0.00518811474899 |
| Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1411 | DNER | 17694 | uc002vpv.3 | chr2 | 230222345 | 230579286 | - | 450 | 100.0 | 3.65 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 1411 | chr2 | 230222927 | 230222934 | phastConsElements100way | lod=42 | score:363, srow:5191911 |
| 1411 | chr2 | 230222953 | 230222969 | phastConsElements100way | lod=56 | score:392, srow:5191912 |
| 1411 | chr2 | 230222977 | 230222984 | phastConsElements100way | lod=28 | score:323, srow:5191913 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 1411 | cellmeth_recounts | PrEC: 3, LNCaP: 0, DU145: 6 |  |
| 1411 | cellexp | id=ENSG00000187957, name=DNER, PrEC=176, str=80, LNCaP=2, str=9, DU145=110, str=65 |  |
| 1411 | tcgameth | site:cg17165432, B=0.89, L=0.91, H=0.89 |  |
| 1411 | tcgaexp | gene=DNER, entrez=92737, pos=chr2:230222345-230579286(-), B=461, L=100, M=321, H=351 |  |