DMR 164 chr1:25254051-25254200 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:25254051-25254200 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | RUNX3 (0bp away) |
| ANODEV p-value | 0.00752744188319 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164 | RUNX3 | 454 | uc001bjq.3 | chr1 | 25226002 | 25256770 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (90.67), I2 (9.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 164 | RUNX3 | 454 | uc001bjr.3 | chr1 | 25226002 | 25291501 | - | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (90.67), I3 (9.33), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 164 | RUNX3 | 454 | uc009vrj.3 | chr1 | 25226002 | 25291475 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (90.67), I4 (9.33), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 164 | RUNX3 | 454 | uc010oen.2 | chr1 | 25226002 | 25256770 | - | 150 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (90.67), I2 (9.33), E3 (0), I3 (0), E4 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 164 | chr1 | 25254130 | 25254134 | phastConsElements100way | lod=71 | score:415, srow:100283 |
| 164 | chr1 | 25254136 | 25254146 | phastConsElements100way | lod=103 | score:452, srow:100284 |
| 164 | chr1 | 25254148 | 25254149 | phastConsElements100way | lod=36 | score:348, srow:100285 |
| 164 | chr1 | 25254151 | 25254161 | phastConsElements100way | lod=141 | score:483, srow:100286 |
| 164 | chr1 | 25254163 | 25254170 | phastConsElements100way | lod=86 | score:434, srow:100287 |
| 164 | chr1 | 25254172 | 25254179 | phastConsElements100way | lod=112 | score:461, srow:100288 |
| 164 | chr1 | 25254181 | 25254188 | phastConsElements100way | lod=92 | score:441, srow:100289 |
| 164 | chr1 | 25254190 | 25254197 | phastConsElements100way | lod=88 | score:437, srow:100290 |
| 164 | chr1 | 25254199 | 25254200 | phastConsElements100way | lod=44 | score:368, srow:100291 |
| 164 | chr1 | 25253528 | 25255527 | cpgShore | — | values(x.gr)[overs$srow, ]:1182 |
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- 10 of 35 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 164 | cellmeth_recounts | PrEC: 162, LNCaP: 341, DU145: 9 |  |
| 164 | cellmeth_diffreps_PrECvsLNCaP | A=54, B=114, Length=240, Event=Up, log2FC=1.08, padj=0.000132644752478371 |  |
| 164 | cellmeth_diffreps_PrECvsDU145 | A=243, B=9, Length=520, Event=Down, log2FC=-4.75, padj=0 |  |
| 164 | cellmeth_diffreps_LNCaPvsDU145 | A=293.99, B=8.42, Length=560, Event=Down, log2FC=-5.13, padj=0 |  |
| 164 | cellexp | id=ENSG00000020633, name=RUNX3, PrEC=325, str=37, LNCaP=13, str=4, DU145=1814, str=1653 |  |
| 164 | tcgameth | site:cg03769939, B=0.72, L=0.83, H=0.81 |  |
| 164 | tcgameth | site:cg05656688, B=0.71, L=0.78, H=0.76 |  |
| 164 | tcgameth | site:cg11336061, B=0.81, L=0.89, H=0.86 |  |
| 164 | tcgaexp | gene=RUNX3, entrez=864, pos=chr1:25226002-25291612(-), B=382, L=368, M=346, H=404 |  |
| 164 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |