DMR Stats | |
---|---|
Position | chr16:31477901-31478150 (View on UCSC) |
Width | 250bp |
Genomic Context | 3' end |
Nearest Genes | ARMC5 (0bp away) |
ANODEV p-value | 0.000886153176743 |
Frequencies | Benign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21237 | ARMC5 | 11320 | uc002eca.4 | chr16 | 31470317 | 31478488 | + | 250 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (100) | 100.0 |
21237 | ARMC5 | 11320 | uc002ecb.2 | chr16 | 31470789 | 31478487 | + | 250 | 100.0 | 0.33 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) | 100.0 |
21237 | ARMC5 | 11320 | uc002ecc.3 | chr16 | 31470317 | 31478488 | + | 250 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) | 100.0 |
21237 | ARMC5 | 11320 | uc010vfn.2 | chr16 | 31469594 | 31478488 | + | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 100.0 |
21237 | ARMC5 | 11320 | uc010vfo.2 | chr16 | 31470268 | 31478488 | + | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 100.0 |
21237 | ARMC5 | 11320 | uc010vfp.2 | chr16 | 31470789 | 31478488 | + | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
21237 | chr16 | 31478001 | 31478005 | phastConsElements100way | lod=32 | score:337, srow:3333609 |
21237 | chr16 | 31478007 | 31478011 | phastConsElements100way | lod=21 | score:295, srow:3333610 |
21237 | chr16 | 31478013 | 31478017 | phastConsElements100way | lod=15 | score:262, srow:3333611 |
21237 | chr16 | 31478019 | 31478029 | phastConsElements100way | lod=34 | score:343, srow:3333612 |
21237 | chr16 | 31478053 | 31478056 | phastConsElements100way | lod=15 | score:262, srow:3333613 |
21237 | chr16 | 31478058 | 31478063 | phastConsElements100way | lod=19 | score:285, srow:3333614 |
21237 | chr16 | 31478068 | 31478074 | phastConsElements100way | lod=20 | score:290, srow:3333615 |
21237 | chr16 | 31478076 | 31478083 | phastConsElements100way | lod=30 | score:330, srow:3333616 |
21237 | chr16 | 31478089 | 31478097 | phastConsElements100way | lod=22 | score:300, srow:3333617 |
21237 | chr16 | 31478101 | 31478103 | phastConsElements100way | lod=14 | score:255, srow:3333618 |
21237 | chr16 | 31478112 | 31478116 | phastConsElements100way | lod=14 | score:255, srow:3333619 |
21237 | chr16 | 31478118 | 31478131 | phastConsElements100way | lod=44 | score:368, srow:3333620 |
21237 | chr16 | 31478136 | 31478145 | phastConsElements100way | lod=15 | score:262, srow:3333621 |
21237 | chr16 | 31476201 | 31478200 | cpgShore | — | values(x.gr)[overs$srow, ]:16735 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
21237 | cellmeth_recounts | PrEC: 33, LNCaP: 20, DU145: 3 | |
21237 | cellmeth_diffreps_PrECvsLNCaP | A=48, B=15, Length=320, Event=Down, log2FC=-1.68, padj=0.000793863773154721 | |
21237 | cellmeth_diffreps_PrECvsDU145 | A=50, B=2, Length=420, Event=Down, log2FC=-4.64, padj=1.56007959341554e-11 | |
21237 | cellexp | id=ENSG00000140691, name=ARMC5, PrEC=805, str=700, LNCaP=1608, str=966, DU145=429, str=306 | |
21237 | tcgaexp | gene=ARMC5, entrez=79798, pos=chr16:31469594-31478488(+), B=919, L=1312, M=1278, H=1016 |