DMR 217 chr1:36786151-36786400 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:36786151-36786400 (View on UCSC) |
| Width | 250bp |
| Genomic Context | 3' end |
| Nearest Genes | SH3D21 (0bp away) |
| ANODEV p-value | 0.00574316733319 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 217 | SH3D21 | 653 | uc009vuz.1 | chr1 | 36784672 | 36786399 | + | 249 | 99.6 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (99.6) | 100.0 |
| 217 | SH3D21 | 653 | uc010oia.1 | chr1 | 36771994 | 36787379 | + | 250 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (99.6), I14 (0.8), E15 (0), I15 (0), E16 (0) | 8.4 |
| 217 | SH3D21 | 653 | uc010oib.1 | chr1 | 36772708 | 36787379 | + | 250 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (99.6), I11 (0.8), E12 (0), I12 (0), E13 (0) | 8.4 |
| 217 | SH3D21 | 653 | uc010oic.1 | chr1 | 36772708 | 36790484 | + | 250 | 100.0 | 0.12 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (99.6), I7 (0.8), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 217 | chr1 | 36786350 | 36786354 | phastConsElements100way | lod=31 | score:333, srow:154450 |
| 217 | chr1 | 36786362 | 36786363 | phastConsElements100way | lod=17 | score:274, srow:154451 |
| 217 | chr1 | 36786375 | 36786378 | phastConsElements100way | lod=35 | score:345, srow:154452 |
| 217 | chr1 | 36786382 | 36786385 | phastConsElements100way | lod=18 | score:280, srow:154453 |
| 217 | chr1 | 36786391 | 36786408 | phastConsElements100way | lod=90 | score:439, srow:154454 |
| 217 | chr1 | 36784501 | 36786500 | cpgShore | — | values(x.gr)[overs$srow, ]:1597 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 217 | cellmeth_recounts | PrEC: 92, LNCaP: 58, DU145: 8 |  |
| 217 | cellmeth_diffreps_PrECvsLNCaP | A=137, B=51, Length=380, Event=Down, log2FC=-1.43, padj=1.29183894024466e-08 |  |
| 217 | cellmeth_diffreps_PrECvsDU145 | A=603, B=34, Length=1500, Event=Down, log2FC=-4.15, padj=0 |  |
| 217 | cellmeth_diffreps_LNCaPvsDU145 | A=415.86, B=31.8, Length=1460, Event=Down, log2FC=-3.71, padj=0 |  |
| 217 | cellexp | id=ENSG00000214193, name=SH3D21, PrEC=1236, str=4923, LNCaP=385, str=211, DU145=607, str=584 |  |
| 217 | tcgaexp | gene=SH3D21, entrez=79729, pos=chr1:36771994-36790484(+), B=219, L=278, M=316, H=377 |  |
| 217 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |