DMR Stats | |
---|---|
Position | chr1:2451951-2452350 (View on UCSC) |
Width | 400bp |
Genomic Context | exon |
Nearest Genes | PANK4 (0bp away) |
ANODEV p-value | 0.000314198928299 |
Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24903 | PANK4 | 105 | uc001ajm.1 | chr1 | 2439975 | 2458035 | - | 400 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (1.5), E4 (46), I4 (52.75), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0) | 0.0 |
24903 | PANK4 | 105 | uc010nza.1 | chr1 | 2439975 | 2458035 | - | 400 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (19.75), E4 (27.75), I4 (52.75), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
24903 | chr1 | 2452244 | 2452248 | phastConsElements100way | lod=57 | score:394, srow:11218 |
24903 | chr1 | 2452250 | 2452250 | phastConsElements100way | lod=19 | score:285, srow:11219 |
24903 | chr1 | 2452253 | 2452263 | phastConsElements100way | lod=103 | score:452, srow:11220 |
24903 | chr1 | 2452265 | 2452275 | phastConsElements100way | lod=94 | score:443, srow:11221 |
24903 | chr1 | 2452277 | 2452278 | phastConsElements100way | lod=32 | score:337, srow:11222 |
24903 | chr1 | 2452280 | 2452296 | phastConsElements100way | lod=180 | score:508, srow:11223 |
24903 | chr1 | 2452298 | 2452348 | phastConsElements100way | lod=489 | score:606, srow:11224 |
24903 | chr1 | 2451552 | 2452795 | cpgShore | — | values(x.gr)[overs$srow, ]:335 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
24903 | cellmeth_recounts | PrEC: 50, LNCaP: 55, DU145: 4 | |
24903 | cellmeth_diffreps_PrECvsLNCaP | A=634, B=183, Length=1160, Event=Down, log2FC=-1.79, padj=0 | |
24903 | cellmeth_diffreps_PrECvsLNCaP | A=181, B=81, Length=400, Event=Down, log2FC=-1.16, padj=2.96197327119751e-08 | |
24903 | cellmeth_diffreps_PrECvsDU145 | A=1057, B=47, Length=2540, Event=Down, log2FC=-4.49, padj=0 | |
24903 | cellmeth_diffreps_LNCaPvsDU145 | A=195.64, B=17.77, Length=1040, Event=Down, log2FC=-3.46, padj=0 | |
24903 | cellmeth_diffreps_LNCaPvsDU145 | A=198.84, B=20.58, Length=1240, Event=Down, log2FC=-3.27, padj=0 | |
24903 | cellexp | id=ENSG00000157881, name=PANK4, PrEC=1861, str=1352, LNCaP=2582, str=1500, DU145=1364, str=1198 | |
24903 | tcgameth | site:cg24046159, B=0.87, L=0.85, H=0.85 | |
24903 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
24903 | tcgaexp | gene=PANK4, entrez=55229, pos=chr1:2439975-2458035(-), B=1312, L=1201, M=1131, H=1176 | |
24903 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |