DMR 24944 chr1:6480301-6481000 (700bp)

DMR Stats
Positionchr1:6480301-6481000 (View on UCSC)
Width700bp
Genomic Contextpromoter
Nearest GenesHES2 (0bp away)
ANODEV p-value2.58454873997e-05
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24944 HES2 150 uc001amw.3 chr1 6472498 6484730 - 700 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24944 chr1 6480817 6480828 tfbsConsSites V$NMYC_01 score:885, zScore:1.82, srow:10229
24944 chr1 6480818 6480827 tfbsConsSites V$USF_Q6 score:896, zScore:1.71, srow:10230
24944 chr1 6480819 6480830 tfbsConsSites V$EGR2_01 score:841, zScore:1.9, srow:10231
24944 chr1 6480819 6480830 tfbsConsSites V$EGR3_01 score:869, zScore:2.4, srow:10232
24944 chr1 6480819 6480830 tfbsConsSites V$NGFIC_01 score:835, zScore:1.76, srow:10233
24944 chr1 6480819 6480836 tfbsConsSites V$CMYB_01 score:814, zScore:2.13, srow:10234
24944 chr1 6480825 6480834 tfbsConsSites V$MYB_Q6 score:921, zScore:1.85, srow:10235
24944 chr1 6480838 6480847 tfbsConsSites V$MYB_Q6 score:944, zScore:2.28, srow:10236
24944 chr1 6480838 6480867 tfbsConsSites V$PAX4_04 score:733, zScore:1.82, srow:10237
24944 chr1 6480841 6480858 tfbsConsSites V$NF1_Q6 score:869, zScore:1.68, srow:10238
24944 chr1 6480847 6480861 tfbsConsSites V$TAXCREB_01 score:832, zScore:2.67, srow:10239
24944 chr1 6480851 6480863 tfbsConsSites V$MAZR_01 score:859, zScore:1.72, srow:10240
24944 chr1 6480855 6480874 tfbsConsSites V$YY1_02 score:796, zScore:2.23, srow:10241
24944 chr1 6480856 6480883 tfbsConsSites V$PAX5_02 score:767, zScore:1.75, srow:10242
24944 chr1 6480857 6480872 tfbsConsSites V$TAL1ALPHAE47_01 score:865, zScore:1.75, srow:10243
24944 chr1 6480857 6480872 tfbsConsSites V$TAL1BETAE47_01 score:858, zScore:2.02, srow:10244
24944 chr1 6480857 6480872 tfbsConsSites V$TAL1BETAITF2_01 score:852, zScore:1.83, srow:10245
24944 chr1 6480871 6480880 tfbsConsSites V$NFKAPPAB50_01 score:874, zScore:1.91, srow:10246
24944 chr1 6480874 6480886 tfbsConsSites V$MAZR_01 score:860, zScore:1.73, srow:10247
24944 chr1 6480805 6480812 phastConsElements100way lod=16 score:268, srow:22425
24944 chr1 6480821 6480836 phastConsElements100way lod=48 score:377, srow:22426
24944 chr1 6480839 6480845 phastConsElements100way lod=14 score:255, srow:22427
24944 chr1 6480850 6480869 phastConsElements100way lod=64 score:405, srow:22428
24944 chr1 6480899 6480907 phastConsElements100way lod=20 score:290, srow:22429
24944 chr1 6480981 6480985 phastConsElements100way lod=16 score:268, srow:22430

Omics Overlaps

Dmrid Omic Set Data Plot
24944 cellmeth_recounts PrEC: 76, LNCaP: 767, DU145: 0
24944 cellmeth_diffreps_PrECvsLNCaP A=136, B=683, Length=1140, Event=Up, log2FC=2.33, padj=0
24944 cellmeth_diffreps_PrECvsDU145 A=158, B=0, Length=1000, Event=Down, log2FC=-Inf, padj=0
24944 cellmeth_diffreps_LNCaPvsDU145 A=764.37, B=0, Length=1360, Event=Down, log2FC=-Inf, padj=0
24944 cellexp id=ENSG00000069812, name=HES2, PrEC=9039, str=21515, LNCaP=78, str=123, DU145=62, str=22
24944 tcgameth site:cg00644814, B=0.46, L=0.59, H=0.56
24944 tcgameth site:cg01501312, B=0.42, L=0.6, H=0.57
24944 tcgameth site:cg24864511, B=0.32, L=0.59, H=0.49
24944 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24944 tcgaexp gene=HES2, entrez=54626, pos=chr1:6472498-6484730(-), B=322, L=373, M=321, H=299
24944 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305