DMR 24985 chr1:9689901-9690050 (150bp)

DMR Stats
Positionchr1:9689901-9690050 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesTMEM201 (14965bp away)
ANODEV p-value0.0132605655884
FrequenciesBenign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24985 chr1 9689770 9690013 wgEncodeRegTfbsClusteredV3 REST score:136, expCount:1, expNums:167, expScores:136, srow:24622
24985 chr1 9689772 9690057 wgEncodeRegTfbsClusteredV3 SPI1 score:1000, expCount:3, expNums:107,126,230, expScores:1000,1000,1000, srow:24623
24985 chr1 9689773 9689996 wgEncodeRegTfbsClusteredV3 ETS1 score:96, expCount:1, expNums:89, expScores:96, srow:24624
24985 chr1 9689831 9690270 wgEncodeRegTfbsClusteredV3 MYC score:564, expCount:2, expNums:489,575, expScores:211,564, srow:24625
24985 chr1 9689899 9690146 wgEncodeRegTfbsClusteredV3 PML score:343, expCount:1, expNums:103, expScores:343, srow:24626
24985 chr1 9689900 9690175 wgEncodeRegTfbsClusteredV3 MAX score:612, expCount:2, expNums:223,576, expScores:244,612, srow:24627
24985 chr1 9689912 9690074 wgEncodeRegTfbsClusteredV3 EGR1 score:636, expCount:2, expNums:87,216, expScores:451,636, srow:24628
24985 chr1 9689923 9689932 tfbsConsSites V$NRF2_01 score:904, zScore:1.94, srow:17998
24985 chr1 9689920 9689958 phastConsElements100way lod=108 score:457, srow:34985
24985 chr1 9689965 9689969 phastConsElements100way lod=15 score:262, srow:34986
24985 chr1 9690009 9690017 phastConsElements100way lod=19 score:285, srow:34987
24985 chr1 9689368 9691367 cpgShelf — values(x.gr)[overs$srow, ]:468

Omics Overlaps

Dmrid Omic Set Data Plot
24985 cellmeth_recounts PrEC: 16, LNCaP: 4, DU145: 6
24985 cellmeth_diffreps_PrECvsLNCaP A=34, B=4, Length=360, Event=Down, log2FC=-3.09, padj=1.07779658804505e-05
24985 cellmeth_diffreps_PrECvsDU145 A=34, B=6, Length=320, Event=Down, log2FC=-2.5, padj=0.000186604078182962
24985 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24985 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305