DMR 25020 chr1:13839451-13839650 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:13839451-13839650 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | LRRC38 (0bp away) |
| ANODEV p-value | 0.00098928673558 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25020 | LRRC38 | 263 | uc001avb.3 | chr1 | 13801445 | 13840242 | - | 200 | 100.0 | 0.07 | 0 | 0.0 | E1 (96.5), I1 (3.5), E2 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25020 | chr1 | 13839589 | 13839608 | phastConsElements100way | lod=112 | score:461, srow:51524 |
| 25020 | chr1 | 13839610 | 13839614 | phastConsElements100way | lod=46 | score:373, srow:51525 |
| 25020 | chr1 | 13839616 | 13839662 | phastConsElements100way | lod=301 | score:558, srow:51526 |
| 25020 | chr1 | 13839506 | 13840613 | cpgIsland | CpG: 89 | length:1108, cpgNum:89, gcNum:586, perCpg:16.1, perGc:52.9, obsExp:1.15, srow:458 |
| 25020 | chr1 | 13837506 | 13839505 | cpgShore | — | values(x.gr)[overs$srow, ]:787 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25020 | cellmeth_recounts | PrEC: 1, LNCaP: 11, DU145: 1 |  |
| 25020 | cellexp | id=ENSG00000162494, name=LRRC38, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 25020 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25020 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |